UFO03175.5prime Sequence
1137 bp (1051 high quality bases) assembled on 2009-02-03
> UFO03175.5prime
CAGTCGACATGTGCCACAATTCAGGGATCGTGGAGAAAAACAACGAGCAG
CAGATCGAGCGCTACATGGCCTGTGGGATGCCATCGAAGGCGGTGAAGAG
TGTCAAGTACACGCTGAAGAAGCGCGAGAAGAAGGAGCAGCAGCGGAGAG
ATCTGGAAAAGGATCTGCACAGGGAACAGCAGTTCCTTGAGGAACTCGAG
CTAAGCAGTAGCGCCAGCGACTCCTCCTCCTCCTCCTCGTCCTCCTCGGT
CACCGGCAGCGATAGCGAGGATAGCGGCGTTACCGAAACCGTTTTGAAAT
CGTCGCCGTCGGCGGATATGACAACCAGTCCAAAGGTCATCTCACCGGCC
CCCACACCCAGAAGCGACCTCTTACGATTCTGCCCGCGATTTCGCAAGCT
GCAGCAGGAGCAGCAGCAGCAGATGCTCAAGGAGATGGAGTTGCAGGAGG
AGGAGCCCTTGGCCACCAGCACGCCCGCCGCCGCCCTGAAGGCTCAACAG
CAGCGCAAGCTGAGCTCCATGGAGCCGTCAATGGACGACGCCCTGGCCAT
CGGCACCCAGATGACTAGGCAGGTGTCCGAGCGAATCACCTGCCTGGTGG
CCAAGCTGCAGGCCAGTCGCCTGTACACAATTCTGACGCGTACGACACAG
CCAGCACACTTGATAGCTGTTTGCATCTTGGCCTTTGTGCTGATGACTGT
GGGACGCGACCTCATCGACCCAACGACAACGGTGGCAACAGCAGAAGCAG
CAGCGTCTGCAACAGCAGCATCGACGAGAACAGCAACGGGCGGAGTTATG
GCGGCCTTGGTCTTCCTGGGCGCCTTTGCCACCCACTTTGGGTCTCAGAT
CTGGATGACATTTGTCTCGGGACTCTCGCTGTATTTCTCTCTGCCCCGCC
ACGTTTTCGGGCAGTGCCAGCAGATCCTCTTCCCGCGCTACTTCGCCCTG
ACGCCATGCTCAGTCTGACGATGCTGGTGGTGTATGCCAAGTATTTCCTC
AGCGATGGACGACATCGCGGGCATCAGATGGCATCGCTGCCCTGGCGGCG
GGAATGGAGGTGGGTGGTGCGCCTGTACCTGGTGCCACCGATGCCTGCAC
TGATGCCGAAAGTTACGGAATCCAGGAGTGCAATCGC
UFO03175.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:46:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32512-RD | 2322 | CG32512-RD | 322..1423 | 9..1106 | 5290 | 99.1 | Plus |
| CG32512-RA | 2215 | CG32512-RA | 322..1423 | 9..1106 | 5290 | 99.1 | Plus |
| CG32512-RC | 1412 | CG32512-RC | 136..620 | 626..1106 | 2205 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:46:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 21066600..21067219 | 628..9 | 3100 | 100 | Minus |
| X | 23542271 | X | 21063801..21064043 | 871..629 | 1215 | 100 | Minus |
| X | 23542271 | X | 21063188..21063416 | 1094..870 | 820 | 96.5 | Minus |
Blast to na_te.dros performed 2014-11-28 21:46:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2390 | 721..789 | 167 | 73.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1076..1144 | 727..795 | 156 | 69.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6791..6857 | 721..787 | 155 | 70.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6728..6815 | 721..805 | 154 | 65.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6698..6781 | 705..789 | 152 | 65.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1093..1162 | 717..789 | 151 | 69.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2582..2666 | 695..780 | 148 | 65.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6767..6828 | 721..782 | 148 | 71 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6749..6818 | 721..787 | 145 | 70 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2752..2832 | 709..787 | 139 | 67.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1099..1151 | 735..787 | 139 | 73.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6827..6898 | 721..789 | 137 | 68.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2360 | 734..789 | 136 | 71.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2364..2432 | 721..786 | 131 | 68.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2762..2817 | 732..787 | 127 | 69.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2369 | 724..789 | 125 | 68.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1061..1112 | 736..787 | 125 | 71.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1040..1121 | 721..805 | 121 | 64 | Plus |
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 508..567 | 714..772 | 117 | 68.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1533..1589 | 721..774 | 116 | 70.2 | Plus |
UFO03175.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:02:49 Download gff for
UFO03175.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32512-RA | 304..1416 | 9..1116 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:39:14 Download gff for
UFO03175.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32512-RA | 322..1434 | 9..1116 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:40:20 Download gff for
UFO03175.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32512-RA | 322..1434 | 9..1116 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:40:20 Download gff for
UFO03175.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 21063165..21063415 | 871..1116 | 94 | <- | Minus |
| X | 21063802..21064043 | 629..870 | 100 | <- | Minus |
| X | 21066600..21067219 | 9..628 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:39:14 Download gff for
UFO03175.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20934192..20934442 | 871..1116 | 94 | <- | Minus |
| arm_X | 20934829..20935070 | 629..870 | 100 | <- | Minus |
| arm_X | 20937627..20938246 | 9..628 | 100 | | Minus |
