UFO03178.5prime Sequence
1112 bp (1011 high quality bases) assembled on 2009-02-03
> UFO03178.5prime
CAGTCGACATGGTTTCTACTTTCATTGGATTATTAGACATTCAATCATGG
TGGGAGATACCGTGTATTTCGCATTTCTGTTCATTGTTTAGTTCTGCCTT
TGATCTGCCCGACATCGACATCGAGGACCTCGAATCGGCGCTGCTCTCCG
ATGGTACCAGCGATGAGGATCAGGTCGCCCTAGTGCCCGAGTTAATTGTG
CGCCTGCTCAAGGGCTGCGATGCGCTACAGACGGTAGCCAAGGAAATCAC
ACACAGCAACTATCAGATGTTCTTGCGTCGCTTCCTGCGCCAACAGTGTC
GCCTGCACCAGACCGAGAACCACTTCGACACGGACATTGACTTCCAGTCG
CTGCCCGTGCGCAAGCGCCTGCACATTCTGCACGATCTGTGCCACTTTCG
CCTGGACTCCGTCGATGTGCAGGTCATCCTCAGCAATCTAGAGGCGGATA
GTCTGCGCGTGGAGCCTCTGGGCTACGACGCCAAGAATTCCGGCTACTGG
TACTTCTACGGCACGCGACTATATCGGGAGGACAAAGCCACCGGTGGATC
GGCCTCCTCCAGTTCGGGTTCGGGATCAGGTGGCGCTGGAGCCTCAACTG
GCGGAGCATCCAACAGCAAGGGCATCGGCAGCAACGGTACAGTTTGGCAA
GTCATCTGCTTCACCGAAGAGGACTGGCAAAACTTGGCCGCCAAGTTTAA
GACCTCGACGAACGCCAAGGAGCGCGAACTCTTTAACATACTCGATGACA
ACTTTCTGCCCAAGCTGCCGCAGCTTTTCCGCGAACGTGAGCGTTTGAGG
CGTAGGAAACTTTTGCAAGTGCGCAACTCCAGCCGCATTCGCAACATCGC
GGAGTTGAAGGCACGCCAGGAGGAGGAGCGCCAGCGTCGTGAGCGGGAGA
ATCTCTACCAGGATCGGCAAACGCACACTGGTGGCACCGCGCAGCAGCAG
CACACAGCAGCACAGCAGCAGCACACAGCAGCATCGCAGCAGCGCACACG
CAGACGTAGCACGCCATGTCGCAGCTTTCTAGAACATCGTTGGCGCGCGG
GCAAGTATGGTCATATCTAATCTAATCTATCTAATTCCAACTAGCTAGGA
ATCCTGCATGAC
UFO03178.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:44:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dikar-RE | 3009 | CG42799-RE | 247..1265 | 9..1016 | 4830 | 98.9 | Plus |
| dikar-RB | 1578 | CG42799-RB | 210..1228 | 9..1016 | 4830 | 98.9 | Plus |
| dikar-RG | 11160 | CG42799-RG | 247..1253 | 9..1006 | 4810 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:44:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6740957..6741641 | 808..124 | 3425 | 100 | Minus |
| 3L | 28110227 | 3L | 6740667..6740873 | 1006..809 | 625 | 94.7 | Minus |
| 3L | 28110227 | 3L | 6741701..6741792 | 126..35 | 460 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:44:38 has no hits.
UFO03178.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:02:48 Download gff for
UFO03178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dikar-RB | 205..1232 | 1..1019 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:38:14 Download gff for
UFO03178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dikar-RB | 205..1232 | 1..1019 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:39:31 Download gff for
UFO03178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dikar-RB | 205..1232 | 1..1019 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:39:31 Download gff for
UFO03178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6740651..6740873 | 809..1019 | 94 | <- | Minus |
| 3L | 6740957..6741639 | 126..808 | 100 | <- | Minus |
| 3L | 6741702..6741790 | 37..125 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:38:14 Download gff for
UFO03178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6733751..6733973 | 809..1019 | 94 | <- | Minus |
| arm_3L | 6734057..6734739 | 126..808 | 100 | <- | Minus |
| arm_3L | 6734802..6734890 | 37..125 | 100 | <- | Minus |
