UFO03180.5prime Sequence
1090 bp (972 high quality bases) assembled on 2009-02-03
> UFO03180.5prime
CAGTCGACATGGGACAGGTTGTGGAGGCCGATATCCTCGGTGACGAGTGG
AAGGGCTACCAGCTGCGCATCGCCGGCGGCAACGACAAGCAGGGATTCCC
CATGAAGCAGGGTGTCTTGACCCACGGCCGTGTGCGTCTGCTCCTGAAGA
AGGGACACTCCTGCTACCGTCCACGCCGCACTGGCGAGCGTAAGCGCAAG
TCTGTGCGTGGATGCATCGTGGACGCCAACATGTCTGTGCTGGCTCTGGT
CGTCTTGAAGAAGGGTGAGAAGGACATTCCCGGTCTCACCGACACCACCA
TCCCACGTCGCCTGGGACCCAAGCGTGCTAGCAAGATCCGCAAGCTCTAC
AACTTGAGCAAGGAAGATGATGTGCGTCGCTTCGTTGTGCGTCGCCCTTT
GCCCGCCAAGGACAACAAGAAGGCCACCTCCAAGGCCCCCAAAATTCAGC
GCCTGATCACCCCCGTTGTGCTGCAGCGCAAGCACCGTCGCATTGCGCTG
AAGAAGAAGCGCCAGATCGCTTCCAAGGAGGCTTCCGCCGACTACGCCAA
GCTGTTGGTGCAGCGCAAGAAGGAGTCCAAGGCCAAGCGCGAGGAGGCCA
AGCGCCGCCGTTCTGCCTCCATTCGCGAGTCCAAGAGCTCTGTCTCCAGC
GACAAGAAGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGT
AAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTA
GGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCC
CGGCGGCAACCGAGCGTTCTGAACAATCCAGATGGAGTTCTGAGGTCATT
ACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCC
CGCCCTGCCACTCATCGCAGTACTGTGTAATCATTAGCATCTGCGACATG
CAGCATCACAAACGCATGATGACTGATCGCAGCGCATCAGCACTGTCCGC
TGCGTATATATTGCCATGTGAAACGGGGCGAAGAGTGGTCATATTGCCGG
TTTAAATCAACCTGGTACTCACCAGATGGCTGAAAACGAA
UFO03180.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS6-RA | 1195 | CG10944-RA | 412..1062 | 9..659 | 3255 | 100 | Plus |
| RpS6-RB | 960 | CG10944-RB | 177..827 | 9..659 | 3255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7899757..7900290 | 659..126 | 2670 | 100 | Minus |
| X | 23542271 | X | 7900802..7900920 | 127..9 | 595 | 100 | Minus |
| X | 23542271 | X | 7897401..7897490 | 591..502 | 270 | 86.7 | Minus |
| X | 23542271 | X | 7898591..7898680 | 591..502 | 270 | 86.7 | Minus |
| X | 23542271 | X | 7897603..7897725 | 263..141 | 195 | 77.2 | Minus |
| X | 23542271 | X | 7898793..7898915 | 263..141 | 195 | 77.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:55:15 has no hits.
UFO03180.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:02:47 Download gff for
UFO03180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS6-RA | 337..996 | 1..663 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:21:44 Download gff for
UFO03180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS6-RB | 171..830 | 1..663 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:45:40 Download gff for
UFO03180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS6-RB | 171..830 | 1..663 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:45:40 Download gff for
UFO03180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7899753..7900289 | 127..663 | 99 | <- | Minus |
| X | 7900803..7900925 | 1..126 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:21:44 Download gff for
UFO03180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7793786..7794322 | 127..663 | 99 | <- | Minus |
| arm_X | 7794836..7794958 | 1..126 | 96 | | Minus |
