UFO03182.5prime Sequence
1126 bp (1017 high quality bases) assembled on 2009-02-03
> UFO03182.5prime
CAGTCGACATGAGCGTTTCGATGTCACTGGTACAGGGTGGTGCTGCCGGT
GGTGCGCCACAGGGCGCCAGCGCAATCTTGGCCGCAGCGGCTCCCTACTA
TCAACCGCCGGCTGTTCCCCAGGATGTTCAGCCGGATCGTCCTATCGGCT
ATGGAGCATTCGGAGTTGTCTGGGCCGTCACAGATCCTCGCGATGGACGA
CGAGTGGCATTGAAGAAGCTGCCAAATGTGTTCCAATCGTTGGTCTCATC
GAAGCGCGTTTTTCGCGAGCTGAAAATGCTGTGCTTCTTCAAGCATGAAA
ATGTTCTTTCAGCTCTGGACATTCTACAGCCACCGCATTTGGATTTCTTT
CAAGAAATCTATGTGATAACGGAGCTGCTGCAATCGGATCTGCACAAGAT
AATCGTGTCGCCACAGCACCTGTCCGCCGACCACATCAAGGTGTTCCTGT
ACCAGATCCTGCGCGGCCTCAAATATCTGCACTCGGCCCGCATCCTGCAT
CGCGACATCAAGCCGGGCAATCTGCTGGTCAACTCGAATTGCGTGCTCAA
GATCTGTGACTTTGGATTGGCCCGCGTCGAGGAGCCGGATCAGGCCAAGC
ACATGACCCAAGAGGTGGTCACCCAGTACTATCGCGCACCGGAGATTCTG
ATGGGCGCTCGCCACTACTCGTCGGCGGTGGATGTATGGTCGGTGGGCTG
CATTTTTGGCGAGCTGCTGGGCCGTCGCATCCTCTTCCAGGCACAGAATC
CTGTGCAGCAGCTGGAGCTGATTACCGAGCTGCTTGGCACGCCCACCATG
GAGGATATGCGTCACGCCCTGCGAGGGCGCCCGCACCCACATGTTGCGCC
GGGCGCCCAAGCCGCCATCCTTCTCGGTGCTCTACACACTCAGCTCGCAT
GCACGCACGAGGCGGTGCACTTGCTCTGCCAGATGCTCGTCTTCGATCGA
TAGCGCATCTTCCGTGAAAGATGCCTGCCGCATCCGTATCTGGATGAGGG
GCGTCTGCGCTATCACTCGTGCATGTGCAAATGCTGCTTCACTACCTCAG
CCGATGCGTCAGTATACCGGCTGATTTGGGCCTCCGCGCAGCCTTCGGAT
TATTCTGGTGGAAACGTAAGCTGAAC
UFO03182.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nmo-RH | 6235 | CG7892-RH | 719..1841 | 9..1124 | 5125 | 97.9 | Plus |
| nmo-RG | 2250 | CG7892-RG | 548..1670 | 9..1124 | 5125 | 97.9 | Plus |
| nmo-RF | 2757 | CG7892-RF | 1055..2177 | 9..1124 | 5125 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8046570..8047159 | 359..948 | 2855 | 99.7 | Plus |
| 3L | 28110227 | 3L | 7980819..7980983 | 9..173 | 825 | 100 | Plus |
| 3L | 28110227 | 3L | 8039874..8040006 | 172..304 | 665 | 100 | Plus |
| 3L | 28110227 | 3L | 8047258..8047367 | 961..1067 | 405 | 95.5 | Plus |
| 3L | 28110227 | 3L | 8045891..8045950 | 303..362 | 285 | 98.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:55:18 has no hits.
UFO03182.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:02:51 Download gff for
UFO03182.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nmo-RE | 711..1839 | 1..1126 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:21:47 Download gff for
UFO03182.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nmo-RF | 1050..2178 | 1..1126 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:45:42 Download gff for
UFO03182.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nmo-RF | 1050..2178 | 1..1126 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:45:42 Download gff for
UFO03182.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7980814..7980982 | 1..172 | 98 | -> | Plus |
| 3L | 8039875..8040004 | 173..302 | 100 | -> | Plus |
| 3L | 8045891..8045946 | 303..358 | 100 | -> | Plus |
| 3L | 8046570..8047161 | 359..949 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:21:47 Download gff for
UFO03182.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7973914..7974082 | 1..172 | 98 | -> | Plus |
| arm_3L | 8032975..8033104 | 173..302 | 100 | -> | Plus |
| arm_3L | 8038991..8039046 | 303..358 | 100 | -> | Plus |
| arm_3L | 8039670..8040261 | 359..949 | 99 | -> | Plus |
