UFO03183.5prime Sequence
1137 bp (1025 high quality bases) assembled on 2009-02-03
> UFO03183.5prime
CAGTCGACATGTCATTTCGCGTAGTGCGCAGTTCCAAGTTCCGCCACGTC
TACGGACAGGCTCTCAAGCGGGAGCAGTGCTACGACAACATACGGGTATC
CAAGTCCAGCTGGGACTCCACATTCTGCGCGGTGAATCCCAAGTTCCTGG
CCATTATCGTAGAGTCGGCGGGCGGCGGAGCCTTCATCGTCCTGCCACAC
AACAAAGTTGGTCGCATTGCGGCTGACCACCCTTTGGTGGGCGGTCACAA
GGGTCCTGTGCTGGACATCGCCTGGTGCCCCCACAACGACAACGTGATCG
CCTCCGGCTCAGAGGACTGTGTGGTCAAAGTGTGGCAGATCCCCGATGGC
GGGCTGTCGCGAACACTCACCGAACCCGTGGTCGACCTGGTTTTCCACCA
GCGTCGCGTGGGTCTGGTGTTGTGGCATCCCTCTGCGCTCAACGTGCTGC
TTACCGCCGGCTCCGATAACCAGGTCGTGATTTGGAACGTGGGCACTGGT
GAAATCCTCGTGCACATCGACTCCCATCCGGACATCGTTTACAGCGCCTG
CTTCAACTGGGATGGCTCTAAGTTGGTTACCACCTGCAAGGATAAAAAGA
TCCGCATCTACGATCCGCGCACTGCCGAGCTGGAGAGCGAAGCCATGTGT
CATGAGGGCTCCAAGGCCACGAGGGCCATTTTCCTACGTCACGGTCTGAT
CTTCACCACAGGCTTCAACCGTAGCTCGGAGCGTCAGTACTCCCTGCGCG
CACCGGATGCCCTTAACGAACCCATTGTCATGGTGGAGCTGGACACGTCC
AACGGCGTAATGTTCCCTCTTTACGACGCAGACACGAACATGATCTACTT
GTGTGGAAAAGGTGACTCGGTCATTCGGTATTTCGAGGTAACGCCCGAAC
CTCCTTTTGTGCACTACATAAACACGTTTCAGACTACAGAGCCGCAGCGT
GTATTGGTCTGATGCCCAAGCGAAGCTGTGATGTGACCACCTGCGAGTCG
CCAAGTTCTATCGCATGAACAACACGTCTGTGTCAGTCATTCTCGATGAC
TGTGCCGCCAATCGATCTTTCCAGAGATCCTTACCCGGAATCGCCTAGGC
GGAAAGAAAGCTGCATTAACGTGGAGGAGTGGAATAC
UFO03183.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:14:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| coro-RG | 2769 | CG9446-RG | 101..1154 | 9..1058 | 5095 | 99.2 | Plus |
| coro-RF | 2794 | CG9446-RF | 126..1179 | 9..1058 | 5095 | 99.2 | Plus |
| coro-RE | 2696 | CG9446-RE | 287..1340 | 9..1058 | 5095 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:14:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6864634..6865051 | 889..472 | 2090 | 100 | Minus |
| 2R | 25286936 | 2R | 6865106..6865374 | 475..207 | 1345 | 100 | Minus |
| 2R | 25286936 | 2R | 6866685..6866884 | 208..9 | 985 | 99.5 | Minus |
| 2R | 25286936 | 2R | 6864397..6864573 | 1058..886 | 630 | 94.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:14:08 has no hits.
UFO03183.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:02:51 Download gff for
UFO03183.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| coro-RC | 266..1348 | 1..1077 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:21:23 Download gff for
UFO03183.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| coro-RE | 280..1362 | 1..1077 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:54:19 Download gff for
UFO03183.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| coro-RE | 280..1362 | 1..1077 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:54:19 Download gff for
UFO03183.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6864375..6864571 | 888..1077 | 93 | <- | Minus |
| 2R | 6864636..6865049 | 474..887 | 100 | <- | Minus |
| 2R | 6865108..6865374 | 207..473 | 100 | <- | Minus |
| 2R | 6866687..6866891 | 1..206 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:21:23 Download gff for
UFO03183.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2751880..2752076 | 888..1077 | 93 | <- | Minus |
| arm_2R | 2752141..2752554 | 474..887 | 100 | <- | Minus |
| arm_2R | 2752613..2752879 | 207..473 | 100 | <- | Minus |
| arm_2R | 2754192..2754396 | 1..206 | 98 | | Minus |
