UFO03184.5prime Sequence
1103 bp (1019 high quality bases) assembled on 2009-02-03
> UFO03184.5prime
CAGTCGACATGCCGCTGCTATTTACGGGCTTCAACGCATTTGGCCAGCAT
GAATGTGTAAGCGGCGACGTCGACTGCGCAGCCGGCTTCAGCGAATTAAA
TGCGCCAGTCTCGACTCAGAACCAGTGCACGATTTCGATCGGCTGGCGGT
ATGCGGCCCTCGCTTTTGGCCGGAAGTTGTGCCTGCGTGGGCTCTTGGAT
GATGGCCCAAATGAGTGCGTGACCCTGGAAGCAACGGGGAACATAAGGGC
CCTTGCCGCTGCCGATTCCCACTGCCTGGTGCTACTCCAAAGCGGTCAGC
TTTACAGGGTGCAACCAAAACTGCAAGCGGAACTGGTGGCTGTTAGACTA
GAAGCTGCTCCCAGATCCAATTCGGGTACAAAGCGCTCTATCTTTGGGGC
TGCCAAGGCGCCTTCGTCGCCGATCATAGAGCATATTGCATGTGGATCGC
ACATAAACGTAGCGATAAGTTCGGAAAACTGTGTCTACAGCATTCCCAGC
TGCCTGCATCAGTTTTCCGAGCGCCAATTTCGGGTGAAGCAGCTCCAATG
CGGCCATGAACATGCCGTGCTCCTCAATGCCAATGGCGACGTGTTCACCT
GGGGAAATGGACTACGCGGACAGTTGGGTCTGGCGGAACTGAGAGTGGAG
GAGACGCCTCAATTGCTGGAGGCGCTGGCGGGGATCAAGATAACTCAAAT
TGCTGCCGGTGGTTGGCACAGTGCGGCCATATCCGCCTTTGGAGACCTCT
ACACCTGGGGCCTCAACTGCAGCGGTCAGCTGGGATTGCGTGTGATGAAA
CCCGGTGGCGTCCTCAAAGAGCCCACTGTATTTCCGCTGCCCCAGTTGCA
AGATCTGCCCGAATGTGCCTGCTCCCAAAGCGGGGAGAGCAACGATGATT
GCGCACCGCTGAGGGTGTTTGCTGGATCTCGTCACACTCTGCTGATCCGC
CGATGCGGGCGGCTATGGGTCAGTGGTTGGTGCAAGCACGGTCACTTGGC
CAGGCAGCTCAGACCTGTCCTATGGTGGATGCTTTCAGGCCCTGCAGTAT
TCACGATGAACCCTTACTGGTGATGATGTTTCTCTTGGTGGCCACATGGT
TCA
UFO03184.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:14:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6678-RA | 2843 | CG6678-RA | 479..1552 | 9..1080 | 5115 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:14:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21888034..21888554 | 93..613 | 2605 | 100 | Plus |
| 3R | 32079331 | 3R | 21888837..21889185 | 688..1035 | 1575 | 98 | Plus |
| 3R | 32079331 | 3R | 21887507..21887591 | 9..93 | 425 | 100 | Plus |
| 3R | 32079331 | 3R | 21888703..21888778 | 614..689 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:14:17 has no hits.
UFO03184.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:02:50 Download gff for
UFO03184.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6678-RA | 462..1548 | 2..1088 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:21:29 Download gff for
UFO03184.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6678-RA | 474..1560 | 2..1088 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:54:24 Download gff for
UFO03184.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6678-RA | 474..1560 | 2..1088 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:54:24 Download gff for
UFO03184.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21887502..21887591 | 2..93 | 95 | -> | Plus |
| 3R | 21888035..21888554 | 94..613 | 100 | -> | Plus |
| 3R | 21888703..21888778 | 614..689 | 100 | -> | Plus |
| 3R | 21888839..21889239 | 690..1088 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:21:29 Download gff for
UFO03184.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17713224..17713313 | 2..93 | 95 | -> | Plus |
| arm_3R | 17713757..17714276 | 94..613 | 100 | -> | Plus |
| arm_3R | 17714425..17714500 | 614..689 | 100 | -> | Plus |
| arm_3R | 17714561..17714961 | 690..1088 | 96 | | Plus |
