UFO03186.5prime Sequence
1098 bp (1003 high quality bases) assembled on 2009-02-03
> UFO03186.5prime
CAGTCGACATGTCATCCTTCAAGGACAAAGTGATTATTGTTACCGGCGCC
AGCTCCGGCATCGGAGCAAGTGCCGCCGTCCATTTGGCGAAACTCGGAGG
GCTCCTGGTCATCGTGGGTCGCAACGAGGAGAAGCTGAAGGAGACGGCCG
ACAACATTGTGGCGGCCGGAGGAGCAACGCCATTGGAACTGCAGGCGGAC
ATGACCAAGGAGGCGGAGGTGCAGCAGATTGTGGGCGCCACTCTGGCCAA
GCACGGTCGCATCGATGTGCTCGTTAACAATGCGGGCATCCTGGAGACAG
GCTCCATCGAAGCCACCAGCCTGGAGCAATTCGATCGTCTGATGAACACC
AATGTGCGTTCCCTGTACCAACTAACCATGCTGGCCACTCCAGAGCTAGT
CAAGACCAAGGGCAATATCGTAAACGTATCCAGTGTCTGTGGACTGCGTG
CCTTTCCTGGTGTCCTGGCCTACAATGTGTCTAAGGCAGCGGTGGACCAG
TTCACGGCCTGCATAGCCCTGGAACTGGCCCCCAAAGGAGTCCGCGTAAA
CGCCGTGAATCCCGGCGTGATTGTGACTGACATTCACAAGCGTGGCGGCA
TGGACGAGGAGACCTATGCCAAGTTCCTCGAACACTGCAAGATAACCCAC
GCCTTGGGCCGTCCTGGCGATGTCAAGGAGGTGGCTGCCGCCATTGCCTT
CCTGGCCAGCGATCAGGCCAGCTTCACCACGGGAATCAGTCTGCCCGTCG
ATGGAGGTCGTCACGCCATGTGCCCGCGAGCAAGCTTTCTAGACCATTCG
TTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAA
TCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGAT
TCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAATCAG
ATGGAGTTCTGAGTCATTACTGGATCTATCACAGAGTCAGCGAGCTCGAT
ATCAATACGCCCGCCTGCCCTCATCGCAGTACTGTTGTATCATAGCATCT
GCGACTGAGCCATCCTACCGCATGATGACTGATCGCCCAGGCGCACGA
UFO03186.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31549-RB | 991 | CG31549-RB | 66..836 | 9..779 | 3855 | 100 | Plus |
| CG31549-RA | 1130 | CG31549-RA | 205..975 | 9..779 | 3855 | 100 | Plus |
| CG12171-RA | 1014 | CG12171-RA | 75..832 | 18..775 | 970 | 75.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5632396..5633166 | 9..779 | 3855 | 100 | Plus |
| 3R | 32079331 | 3R | 5633701..5634458 | 18..775 | 970 | 75.2 | Plus |
| 3R | 32079331 | 3R | 5634825..5635142 | 725..408 | 390 | 74.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:16:32 has no hits.
UFO03186.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:02:42 Download gff for
UFO03186.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31549-RA | 196..975 | 1..779 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:42:39 Download gff for
UFO03186.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31549-RA | 196..975 | 1..779 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:00:16 Download gff for
UFO03186.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31549-RA | 196..975 | 1..779 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:00:16 Download gff for
UFO03186.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5632387..5633172 | 1..786 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:42:39 Download gff for
UFO03186.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1458109..1458894 | 1..786 | 98 | -> | Plus |
