UFO03193.5prime Sequence
1124 bp (1026 high quality bases) assembled on 2009-02-03
> UFO03193.5prime
CAGTCGACATGCGCGAATGTATCTCTATCCACGTGGGCCAGGCCGGAGTC
CAGATTGGAAATGCCTGCTGGGAGCTCTATTGCCTGGAGCACGGCATCCA
GCCCGATGGCCAGATGCCCTCCGACAAGACCGTAGGCGGAGGTGATGACT
CGTTTAACACCTTCTTCAGCGAGACTGGAGCTGGCAAGCACGTGCCTCGC
GCCGTGTTCGTGGATCTGGAGCCCACTGTGGTCGACGAGGTCCGTACTGG
AACCTACCGTCAGCTGTTCCACCCCGAGCAACTGATCACCGGTAAGGAGG
ATGCGGCCAACAACTACGCCCGTGGCCACTACACCATTGGCAAGGAGATC
GTCGACCTGGTGCTGGACAGGATCCGCAAGCTGGCCGATCAATGCACCGG
TCTGCAGGGCTTCCTCATCTTCCACTCGTTCGGTGGAGGTACCGGCTCCG
GCTTCACCTCGCTGCTGATGGAGCGTCTCTCCGTGGACTACGGCAAGAAG
TCCAAGCTGGAGTTCGCCGTGTACCCAGCTCCGCAGGTGTCCACCGCCGT
GGTGGAGCCCTACAACTCCATCCTAACCACGCACACCACCCTCGAGCACT
CCGACTGCGCCTTTATGGTGGACAACGAGGCCATCTACGACATCTGTCGC
CGAAACCTGGACATCGAACGACCCACTTACACTAACCTGAATCGTTTAAT
CGGCCAAATAGTGTCCTCGATCACCGCCTCTCTGCGATTCGATGGAGCCC
TAAATGTGGACCTCACCGAGTTCCAGACCAACCTGGTTCCTTACCCCCGC
ATCCACTTCCCGCTGGTGACGTACGCTCCCGTCATCTCCGCCGAGAAGGC
CTACCACGAGCAGCTGTCGGTGGCCGAGATCACCAACGCCTGCTTCGAGC
CAGCCAACCAGATGGTCAAGGTGATCCCCGTCACGGCAAGTACATGTCTG
CTGCATGCTGTATCGCGGCGATGTGTGCCCAAGACGTGAACGCCGCCATC
GCCACCATCAGAACAAGCGTACAATCAGTCGGTGACTGTGCCCACCGGCT
TCAAGGTGGCATCACTACAGCCACCCCACTGTCGTCCAAGGCGGGAATCT
GCCAAGGGTGCAACGGTCAGTGTC
UFO03193.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:23:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alphaTub84D-RA | 1980 | CG2512-RA | 507..1617 | 9..1107 | 5090 | 98 | Plus |
| alphaTub84B-RA | 1752 | CG1913-RA | 144..1223 | 9..1076 | 3840 | 91.1 | Plus |
| alphaTub85E-RA | 1560 | CG9476-RA | 102..1213 | 8..1107 | 2860 | 84.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:23:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7531259..7532264 | 9..1010 | 4815 | 99.5 | Plus |
| 3R | 32079331 | 3R | 7087233..7088236 | 11..1010 | 3665 | 91.9 | Plus |
| 3R | 32079331 | 3R | 9732286..9732779 | 529..36 | 1570 | 87.9 | Minus |
| 3R | 32079331 | 3R | 9731673..9732152 | 1010..535 | 1135 | 84.4 | Minus |
| 3L | 28110227 | 3L | 9682200..9682770 | 276..846 | 635 | 74.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:23:28 has no hits.
UFO03193.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:07:55 Download gff for
UFO03193.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alphaTub84D-RB | 391..1516 | 1..1115 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:45:25 Download gff for
UFO03193.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alphaTub84D-RA | 499..1624 | 1..1115 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:04:33 Download gff for
UFO03193.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alphaTub84D-RA | 499..1624 | 1..1115 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:04:33 Download gff for
UFO03193.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7531251..7532376 | 1..1115 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:45:25 Download gff for
UFO03193.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3356973..3358098 | 1..1115 | 97 | | Plus |
