UFO03195.5prime Sequence
1117 bp (1007 high quality bases) assembled on 2009-02-03
> UFO03195.5prime
CAGTCGACATGAACATCGACGACTACGAATCGCTGCCCACCACCAGTGTG
GGTGTCAATATGACGGCGGGCGCAATTGCGGGCGTGCTGGAGCATGTGGT
CATGTATCCGCTGGACTCCGTCAAGACGCGAATGCAGAGCCTTTCACCGC
CCACAAAAAACATGAACATAGTGTCAACCCTTCGGACTATGATCACGCGT
GAAGGCCTGTTAAGACCCATTCGGGGAGCCAGCGCCGTGGTGCTGGGTGC
TGGACCAGCACACTCGCTATACTTTGCCGCCTACGAGATGACCAAGGAGC
TCACGGCCAAGTTCACATCGGTGAGAAACCTCAACTACGTGATTTCGGGA
GCGGTGGCCACCCTCATACACGACGCCATTTCTAGTCCCACGGATGTGAT
CAAACAGCGTATGCAGATGTACAACTCGCCCTACACATCGGTGGTATCCT
GCGTGCGGGATATCTACAAGAGGGAAGGCTTCAAGGCCTTCTACCGGGCA
TATGGCACGCAACTGGTCATGAATCTACCATATCAGACAATACATTTTAC
CACATACGAGTTTTTCCAGAACAAAATGAATCTGGAACGCAAATACAATC
CACCAGTGCATATGGCAGCGGGTGCAGCAGCCGGTGCGTGTGCGGCGGCT
GTAACCACGCCCCTGGACGTGATCAAGACGCTACTAAATACTCAGGAGAC
AGGACTGACGCGCGGCATGATCGAGGCCAGTCGAAAGATCTACCACATGG
CCGGTCCATTGGGCTTCTTTAGGGGCACGACCGCCCGCGTTCTGTACTCA
ATGCCCGCCACGGCCATCTGCTGGTCGACGTACGAGTTCTTCAAGTTCTA
CCTGTGCGGGCCTGCACGCTGATCAGTACAAATCGTCAATTACGGGCAGC
TCGGAGCCTCGCAAAGCGGACTACGTGCTGCCGAGGACTACGGATGAGGA
GCAGATCGATCAGGAGCGCGAGGCGTCAAAGGAGAAGACCACCACGGCCA
CCCTGCACTCTGCCCCGAACTTCGGTCAATGCCTCCGGGTGCAATAAAGA
CGGTGGTGGCGAACTGTCGACCGCGGCTGCGGTCCAACAATCCAATTCTG
TCACAGCGGTCACACGG
UFO03195.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:14:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mfrn-RA | 3037 | CG4963-RA | 711..1813 | 8..1117 | 5075 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:14:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27944078..27944394 | 1055..736 | 1330 | 96.6 | Minus |
| 3R | 32079331 | 3R | 27944779..27945015 | 575..339 | 1185 | 100 | Minus |
| 3R | 32079331 | 3R | 27944553..27944714 | 737..576 | 810 | 100 | Minus |
| 3R | 32079331 | 3R | 27945077..27945203 | 339..213 | 635 | 100 | Minus |
| 3R | 32079331 | 3R | 27947194..27947311 | 125..8 | 590 | 100 | Minus |
| 3R | 32079331 | 3R | 27945252..27945342 | 214..124 | 455 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:14:15 has no hits.
UFO03195.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:02:45 Download gff for
UFO03195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4963-RA | 690..1748 | 1..1062 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:21:27 Download gff for
UFO03195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mfrn-RA | 702..1760 | 1..1062 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:54:23 Download gff for
UFO03195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mfrn-RA | 702..1760 | 1..1062 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:54:23 Download gff for
UFO03195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27945077..27945201 | 215..339 | 100 | <- | Minus |
| 3R | 27945252..27945340 | 126..214 | 100 | <- | Minus |
| 3R | 27947194..27947314 | 1..125 | 96 | | Minus |
| 3R | 27944073..27944392 | 738..1062 | 96 | <- | Minus |
| 3R | 27944553..27944714 | 576..737 | 100 | <- | Minus |
| 3R | 27944779..27945014 | 340..575 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:21:27 Download gff for
UFO03195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23769795..23770114 | 738..1062 | 96 | <- | Minus |
| arm_3R | 23770275..23770436 | 576..737 | 100 | <- | Minus |
| arm_3R | 23770501..23770736 | 340..575 | 100 | <- | Minus |
| arm_3R | 23770799..23770923 | 215..339 | 100 | <- | Minus |
| arm_3R | 23770974..23771062 | 126..214 | 100 | <- | Minus |
| arm_3R | 23772916..23773036 | 1..125 | 96 | | Minus |
