UFO03196.5prime Sequence
886 bp (574 high quality bases) assembled on 2009-02-03
> UFO03196.5prime
CAGTCGACATGAGTATCTGGCCCATTCGAACACTACCAAATTCCAAAATG
CGTAGTTGCATGATGGAGCTCGGTCGCACCAATCGCCACACGGATTGCAC
ATTTATAATTGAGGATGAGAGCGGTGGCAGTCAATCGTTTCCCTGCCACA
AATTGCTATTCAGCTGCGCCTCCGATGTGTTCGATCGCATGCTCTATGGC
GACTACATTGAGTCTACTAGCGGAGTTGTCAGACTAAATGATGTACAACC
GGATATATTTGAGAAATTCCGAGACTATGTCTACGGCTATGAGTGCGATA
AACTGCAGAAGTACGACTTTGATACTCTGATTCGCCTCTGTGAGTTTGCT
AACAAATATCTGGTGCAATCTCTCGAAGAGGACTGTGTAAAGGATTTGCT
GATACGCAAGAACACTTTTGACATGGGAGAGTTACTTCGTCTATTCCAGT
GTGCGCATCGCATGAATCGCAAAGTCGTTAAAAAAATCAGATAGCCCTGG
GAGCTAAAGTGCACCTTTCAAGAGCACCTTGGACCACTCCTGGCGTATAC
GAATTTCATTTGCGAGGTATTTAAAACACTATATCGAAAGTGATTTGCTA
GCAAAATATCGGGAGGCAGATCGTTTCCGTCTGCTGGGAAATGTATCTAA
AATATAATGGTATCGAGGAATTGGGAAAGCGCGGGGCAAGTGGATAGCCA
GGATGCAACTGAAGCTCAACACCACCACCATCACCACCACCAACGAAGTG
TAAATCAGAATCGGAACTTCCGTCACTAGCTGCGTTCCGCTCAAACTGAA
TGCAGTTTGCCGTTCTAAATAAGACGCAGGTTTGTCAGCGATCTACTTGC
ACTGATGATTTGCAACTTCGCCAAGGAATCTACGAT
UFO03196.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:29:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11714-RD | 3514 | CG11714-RD | 146..1024 | 9..886 | 3705 | 96.3 | Plus |
| CG11714-RA | 1650 | CG11714-RA | 146..1024 | 9..886 | 3705 | 96.3 | Plus |
| Fuca-RC | 3513 | CG6128-RC | 146..1024 | 9..886 | 3705 | 96.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:29:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11521676..11522507 | 856..19 | 3160 | 96.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:29:46 has no hits.
UFO03196.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:02:44 Download gff for
UFO03196.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11714-RA | 140..1008 | 1..872 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:06 Download gff for
UFO03196.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11714-RA | 140..1008 | 1..872 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:15 Download gff for
UFO03196.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fuca-RC | 140..1008 | 1..872 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:15 Download gff for
UFO03196.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11521655..11522513 | 15..872 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:06 Download gff for
UFO03196.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11514755..11515613 | 15..872 | 96 | | Minus |
