UFO03201.5prime Sequence
1123 bp (1005 high quality bases) assembled on 2009-02-03
> UFO03201.5prime
CAGTCGACATGGCACTACAAGGCTGGCGCTTTTTCGGTGTCTCGGCAACC
ATCATCATCTACATCGGCGGCGTCCTGTTCCTCTCCATGAACAACATACC
CGGATCGCATCCCAAAAGACCGCGCATCGAACGTTTCGCCGAGTTTCCCA
GCTTTCATAGTCCTCGGTTTCCGATGCCCAGCCGCAAGATGACGATACGC
TGGTGTCGCGACCTCAAGTACATAAATCGAGATCTTCCAATCTACGCGGA
TTACAAGTCCGACTTCTACACGGCCCTGCCCAGTGACGTCAGTGCTGCCC
TGCAATCGCTGCCAGCGTTGACCGCCCTGGCCAGTTTTCCTGGCAGCGGT
AACACGTGGCTAAGGTACTTGCTCCAGCAGGCCACCGGCATCCTGACGGG
CAGCATCTACAAGGACTACGGCCTGCTGAAGACCGGCTTTCCGGCGGAGA
ACGTCTGCAACAGTTCAGTATTATTGGTGAAGACCCACGAGTGGGGCAGC
AAAGCGTGGGCGCCCTTCTCGAAAGCAATTCTTCTCGTCCGCGATCCGGA
GAAAGCGATCATCGCGGAGTTCAATCGCCAGAGTGGCGGTCACATCGGAT
TCGCATCACCGGATCGCTACAAGCGCACCAAGGGAAAATACTGGCAGCAA
TTCGTGAGCAACAAGCTCAAGGGCTGGGAGATGATGAACCTCAGCTGGGC
GCGCAACTTCACGGGCAGCATCAAGGTGGTGTTCTACGACGACCTGGTCC
ACCATACCGAGCGGGAGCTGCGCTCCATTCTGGGACTTCCTGCAGTTCCC
CATCAACGAGCAACTGATGCGGTGCGCCATTATGCGGGAGGGACGGCATC
TTCGGGCGGAAGAAACGTCTGTTATCTTTCGATCCCTATACGGAATCATG
AGAGCGGAGGTGCAGAATCGACGGCGCATCGTGTACGGATTGCTGGGGCG
TCAGGAGCCGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGG
TAAGTGTTCATATTCATAATCATATCATAATCATATCACACTAGCTAGGA
AGATCCTGGGTCATGACTAGTGCTGGATCTCACAATAAAACGCCCGGCGC
ACGAACGGTCTGAACCATCGAAT
UFO03201.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:48:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9164-RD | 4420 | CG9164-RD | 2758..3712 | 5..960 | 4635 | 99.2 | Plus |
| CG9164-RB | 1781 | CG9164-RB | 119..1073 | 5..960 | 4635 | 99.2 | Plus |
| CG9164-RC | 2476 | CG9164-RC | 546..1500 | 5..960 | 4635 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:48:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15381802..15382170 | 639..271 | 1845 | 100 | Minus |
| X | 23542271 | X | 15381347..15381666 | 960..640 | 1400 | 97.8 | Minus |
| X | 23542271 | X | 15382546..15382684 | 143..5 | 680 | 99.3 | Minus |
| X | 23542271 | X | 15382229..15382357 | 270..142 | 645 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:48:54 has no hits.
UFO03201.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:07:49 Download gff for
UFO03201.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9164-RB | 116..1073 | 1..960 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:40:50 Download gff for
UFO03201.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9164-RC | 543..1500 | 1..960 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:41:39 Download gff for
UFO03201.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9164-RC | 543..1500 | 1..960 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:41:39 Download gff for
UFO03201.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15381802..15382170 | 271..639 | 100 | <- | Minus |
| X | 15382229..15382355 | 144..270 | 100 | <- | Minus |
| X | 15382546..15382687 | 1..143 | 97 | | Minus |
| X | 15381348..15381666 | 640..959 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:40:50 Download gff for
UFO03201.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15275381..15275699 | 640..959 | 97 | <- | Minus |
| arm_X | 15275835..15276203 | 271..639 | 100 | <- | Minus |
| arm_X | 15276262..15276388 | 144..270 | 100 | <- | Minus |
| arm_X | 15276579..15276720 | 1..143 | 97 | | Minus |
