UFO03203.5prime Sequence
1140 bp (842 high quality bases) assembled on 2009-02-03
> UFO03203.5prime
CAGTCGACATGATGTCCAGAACAGATCTTCTAATCGCCGGACTCCTACTG
ATCGTGGGCAGTGCCGCGGTGATCTCCTACCCACAATCCTCGATGGACGA
TGACCAAATGCAGGCCGATGATGACTTCGACTACGGAGGCGAAGACCAGA
GTGCGCCCAGTCCGCAGACGAAGTCCCCCAATCCTGTAGCCAGCGAAAAG
ATCAACAAGACCCTCAGTGTGACGGGAATCCGTGGCGAGGATGTGGTTCT
CAAGTGCGATGTGGGAAGCAATTTGCACAGCTCAGACGTGGTGGTCTTGT
GGTACTTCGGCGATAATGTCATTTCCAATGGCAAGAACCTGGTGCAGCCC
AACTTCAAACTGGACGCCAACTACGACCTGACCATCCTGAAGGCGAGTCC
CCAGGTGGCTGGCAGCTATCTCTGCAAGGTTCTGCCCTCCGGATCCGTGG
TCAACACGAAGGTGACCATCGCCGAGCATTCCCTGGACGCCATTGCCCCG
GAGAGCTCCACATCCGCGGCGGGATCTGCGAGCAGTTTTCTGGGATGCAC
TGTCCCTGGCATCGACCGTGTTGCTCCTCCTGGGGATGGGCGCACATGCA
AGCTTTCTAGACCATTCGTTTGGCGCGCGGTCCCAGGTAAGTGGTCATAA
TCATAATCATAATCATAATCATATCACAACTAGCCTAGGAGATCCTGGTC
ATGACTAGTGCTTGGATTCTCACAAATAAAAAACGCCCGGCGGCAACCGA
GCGTTCTGACTAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCA
ACAGGAGTCCAAGCGAGCTCGATATCAAATACCGCCCGCCCTGCCACTCA
TCGCAGTGCTGTTTGTAATTCATTAAGCTTTCTGCCGACATGGAAGCCAT
CAAAACGGCATGATGAACCTGAATCGCCCGCGGCTTCAGCACCTTGTCCG
TCTTGCGTTAAATATTTTGCCCATGGTGAAAACGGGGGGCGAAGAAGTTG
TTCATTATTGGGCCACGTTTTAATTCAAACTCGGGGAAACTCTCCCCAGG
GATTGGCTGAAAACGAAAACCTATTCTCCAAATAAACCCTTTAGGGAATA
TGGCCCAGGTTCCCGGGAAACCCGCCCCCAACTCTGGGAA
UFO03203.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:31:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| babos-RB | 1303 | CG3624-RB | 361..948 | 9..597 | 2920 | 99.8 | Plus |
| babos-RA | 1116 | CG3624-RA | 361..948 | 9..597 | 2920 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:31:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22394231..22394553 | 597..274 | 1570 | 99.7 | Minus |
| 2R | 25286936 | 2R | 22394612..22394816 | 273..69 | 1025 | 100 | Minus |
| 2R | 25286936 | 2R | 22401639..22401699 | 69..9 | 305 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:31:23 has no hits.
UFO03203.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:07:46 Download gff for
UFO03203.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3624-RA | 351..951 | 1..605 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:59 Download gff for
UFO03203.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| babos-RA | 354..954 | 1..605 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:00 Download gff for
UFO03203.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| babos-RA | 354..954 | 1..605 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:00 Download gff for
UFO03203.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22394219..22394553 | 274..609 | 97 | <- | Minus |
| 2R | 22394612..22394815 | 70..273 | 100 | <- | Minus |
| 2R | 22401639..22401706 | 1..69 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:59 Download gff for
UFO03203.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18281724..18282058 | 274..609 | 97 | <- | Minus |
| arm_2R | 18282117..18282320 | 70..273 | 100 | <- | Minus |
| arm_2R | 18289144..18289211 | 1..69 | 94 | | Minus |
