UFO03204.5prime Sequence
1119 bp (990 high quality bases) assembled on 2009-02-03
> UFO03204.5prime
CAGTCGACATGGACTCCAGCCACATAGCCGTGCGAGTGGCACGTCGTAGT
CCCTCGCCGGCCGCCGTCTCTCAGTCGTCGTACGGCAGCCTGGGTTCCAG
CCAAGATATACACATTCGAGTGGACAAGGAAGGCGTTGCAAGCGAATCCA
CTCCCTTGCTGGCAGCTGCTCAGCGGTCCATCAAGACGTCCTCATCCCTC
ACAGCCTCAGTCTCAGCCTCCTCCACGACGCCTTCGAATTGCCGAAGGAA
CCCGACGCTCCACGAAGACTGCTTCAATTGGCGCTCGGTGGGACTGCTGG
TCATGTGTGCATCCGCCTTGGCACTGGCCGCCTATTTGCTCTGGAGACAA
ACCCAAACGCCGGACTTTGGCTATCGACTCAGTATCGTGGGTCATGGCAT
ATGGTCGGATATGGAACTTCAGGGTCGGGGAACTCTTTTCGATCCGATCG
GTGTCGGCACAGTGATTTTTACCCACACTGGAAGCAATGAATGCCACGAT
GATTGCCCGGATGTATTGCATAAGCTGGAAAGGTCGCATGTGGGGGAGCT
GCCCTACAACTTTCTGGTCGCCGGTGATTGTCAGGTTTTCGAGGCACAAG
GATGGCACTATCGGAGCCAGTATCCAAGGGATCTAAATGGAATAGACTCG
TTGGTGATGGCCTTTGTGGGTAACTTCAGCGGCAGACCACCCATCGATTG
CCAGTTGATGGCCGCCCAGGCTCTGATCCTTGAGTCTTTAAAGCGTCGGA
TTCTGCAGCCAATTTACCAACTCTTCGTGTTGGGCAGCTATACGGACGCA
CTGCAGCGGGAACTGAGGCACTGGCCGCACTACGCGAGCCACCAAACGTC
CAAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGG
TCATAATCATATCATATCATAATCATAATCACACTAGCCTAGGAGATCCT
GGTCATGACTAGTGCTTGATTCCCACCAATAAAAAACGCCCGGCGCACGA
GCGTTCTGAACAAATCCAGAATGGGAGTTCTGAGTCATACTGATTTATCA
AGGAGTTCAGCGAGCTCGAATTCATACGCCCCGCCTGCCACTTATCGTAT
CTGGTTGTATTCATTAGCA
UFO03204.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PGRP-LD-RC | 3010 | CG33717-RC | 719..1565 | 8..854 | 4235 | 100 | Plus |
| PGRP-LD-RA | 3600 | CG33717-RA | 1309..2155 | 8..854 | 4235 | 100 | Plus |
| PGRP-LD-RB | 3563 | CG33717-RB | 1272..2118 | 8..854 | 4235 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5782917..5783240 | 531..854 | 1620 | 100 | Plus |
| 3L | 28110227 | 3L | 5781996..5782308 | 39..351 | 1565 | 100 | Plus |
| 3L | 28110227 | 3L | 5782671..5782849 | 352..530 | 895 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:22:38 has no hits.
UFO03204.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:07:44 Download gff for
UFO03204.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PGRP-LD-RC | 716..1577 | 1..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:45:04 Download gff for
UFO03204.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PGRP-LD-RB | 1263..2124 | 1..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:04:04 Download gff for
UFO03204.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PGRP-LD-RB | 1263..2124 | 1..859 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:04:04 Download gff for
UFO03204.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5781997..5782308 | 40..351 | 100 | -> | Plus |
| 3L | 5782671..5782849 | 352..530 | 100 | -> | Plus |
| 3L | 5782917..5783246 | 531..859 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:45:04 Download gff for
UFO03204.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5775097..5775408 | 40..351 | 100 | -> | Plus |
| arm_3L | 5775771..5775949 | 352..530 | 100 | -> | Plus |
| arm_3L | 5776017..5776346 | 531..859 | 99 | == | Plus |
