UFO03207.5prime Sequence
1122 bp (1030 high quality bases) assembled on 2009-02-03
> UFO03207.5prime
CAGTCGACATGGAAAGTATCAGCACCACAGGTCGGCGACGGAACAACATG
CGAATCAATGCCGAAGACAATGCGCTGGATCAAATTACGAAAGAGGCGGA
AGCGCGACTTGCTGCGCGTCGACAGGCGCGCGCCGAAGCCCGCGAGATTC
GCATGAGGGAGCTGGAGCGGCAGCAGAAAGAGCAGGAGATCACCGCCGAC
CGGGTCTTCGACATGCAAAACTCCACGGCAGTGGGCAGCGAAACTCTGTC
GGCGCATCCCGTGCGCCTCGCCTACGGCGGACTGTTAAACGTGACCCGTG
CATCAGCATCCCGCCGCAGCAGTGAGGACTCCGTGGAGGAGGAGGGCAGA
AGTTTTCGCGACTTCAAGCACGAGCTTAAGGATGTTGAGGAGCGGTTTCG
CAAAGCCATGATAACGAACGCCCAGTTGGACAACGATCGCGCCTCGCAGG
CCTACGAAGTCAAGCTACTGAAGGACAAATGCGAAATAATGGAAGAGTCG
TATGCACAACTACAGCGCGAGTTCAAGGAGAAGATGCGTGACTGCAATGC
CCTCAAACGCAACCTGGATCGCGCCAATCTCGAGCTTAAGCTAGTACAAG
GGCAGTTAAACGAGCGCGACTCGTTGATCGCCGAACAGGGCCTTCTAATT
GTAGCAGTTGAAAATGCCGATGGCAGCGATGCCAAGCGAGCTCTAGTGAG
TGTCGAGAATGCCAAGGTGCTGGCCTCCGTGCAGGGTTCTTTAGACGTTA
GACTTAAAAAGTTCAGTGACGAGAAGCAGCGGCTGCTGGCGGAGGTGCAG
AAGCTTCACGAACAACTTGACGAGTATAAAAGTGATGGAATTTCCGGACG
CCGCAGTCTTTCGCAAGGTTCCTTCGGCGATGAGAATGATTACGAGCCCA
ACGGGAAACAAACAAAATCATTTCAGACCATAAATATAGCTGCAAAGGCG
GACAGGAAATCGCACTTACAGTCGAGCCTAGCGCGCTCGGAACTCAAGTA
TCCGATACAAAGCACCGCAGAGCTGCCGAAAGCGAGCTGACTGAGCTGGA
CGCGCAGCTGCACGCGAGCCGGGACTCTTGGAAGTGAGACTGAACGTCCA
AACCATTGTGAACGCCTGAATG
UFO03207.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:49:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8578-RC | 1847 | CG8578-RC | 112..1208 | 9..1082 | 4910 | 97.7 | Plus |
| CG8578-RB | 1474 | CG8578-RB | 92..1188 | 9..1082 | 4910 | 97.7 | Plus |
| CG8578-RA | 1615 | CG8578-RA | 112..1208 | 9..1082 | 4910 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:49:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15845982..15846347 | 379..744 | 1830 | 100 | Plus |
| X | 23542271 | X | 15845640..15845927 | 94..381 | 1440 | 100 | Plus |
| X | 23542271 | X | 15846407..15846560 | 743..896 | 770 | 100 | Plus |
| X | 23542271 | X | 15845382..15845469 | 9..96 | 440 | 100 | Plus |
| X | 23542271 | X | 15846957..15847094 | 903..1031 | 245 | 92 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:49:52 has no hits.
UFO03207.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:07:42 Download gff for
UFO03207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8578-RA | 83..1130 | 1..1040 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:41:46 Download gff for
UFO03207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8578-RA | 83..1130 | 1..1040 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:30:44 Download gff for
UFO03207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8578-RA | 104..1151 | 1..1040 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:30:44 Download gff for
UFO03207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15845374..15845468 | 1..95 | 95 | -> | Plus |
| X | 15845642..15845926 | 96..380 | 100 | -> | Plus |
| X | 15845984..15846347 | 381..744 | 100 | -> | Plus |
| X | 15846409..15846567 | 745..902 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:41:46 Download gff for
UFO03207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15740017..15740380 | 381..744 | 100 | -> | Plus |
| arm_X | 15740442..15740600 | 745..902 | 99 | -> | Plus |
| arm_X | 15739675..15739959 | 96..380 | 100 | -> | Plus |
| arm_X | 15739407..15739501 | 1..95 | 95 | -> | Plus |
