Clone UFO03208 Report

Search the DGRC for UFO03208

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:32
Well:8
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/Transcriptl(2)gl-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO03208.5prime Sequence

1115 bp (1009 high quality bases) assembled on 2009-02-03

> UFO03208.5prime
CAGTCGACATGTTAAAGTTTATCAGAGGAAAAGGGCAGCAGCCCAGTGCT
GACAGACACCGCCTACAGAAGGACCTTTTTGCTTATCGTAAGACGGCACA
GCATGGCTTTCCTCATAAGCCTTCGGCTCTTGCGTATGATCCAGTTTTGA
AACTTATGGCAATAGGGACGCAAACAGGGGCTTTAAAAGTTTTCGGTCAA
CCCGGAGTTGAATTGTACGGTCAGCATACTTTGTTAAACAATTCAGCATC
GGAGCTTAATGTACAATTACTTGAATGGGTGTATGGAACTGGTCGCATAC
TTTCGTTGACGGCAGCGAATCAATTAATTCTATGGGAGCCAGTTGGAGCA
ACGTTGCTGCCAATCAAAACACTACCGTTTGACGGCAAACTTAAAAAAGT
TTCATCGCTGTGCTGTTCTCTCAGTAAGGATCTGCTATGGATTGGAACAG
AAGGTGGAAACATCTATCAACTGGATTTACATACATTTACCATTAAGGAG
CCTGTAATTTACCATGACGTTGTGCTAGAGCAGGTGCCACCAGCCTACAA
GCTAAATCCTGGTGCAATTGAGTCAATCCGCCAACTTCCAAACTCCCCTA
GCAAACTTCTAGTTGCATACAATCGCGGCCTTTGTGTTTTGTGGGATTTT
GAAAGCGCATCTGTCCAGCGAGCATACATAGCCCCTGGACATGGACAGAG
CGTTGGTCTTACAGTGAACTTCGAAAGGATCTGAATTTACCTGGTACCAC
GCTGATGGTTCATACGCCACTTGGAGCATAGATAACCCAGAACCGCCGTC
GAATGTTAATTATGTGCCTTATGGACCTGATCCATGCAAAAGCATAAATC
GACTGTACAAAGGCAGCGAAGATCCAACGATGTAATTGTTTTTCCGGCGC
ATGCCACGTCAGCATATGGTGATCACATTGTGTGTCCGTCACGCCAGCGA
TGACACAAAGTGTGTCTGACTTTACGTCTAAAGTGATTGACTTTTTTGTG
ACTTTGAAAATAATAGAAATGTCGCTGAGTTCTTGTTGTACTACTGAAAA
GGACTCTGGCCTACGATCTACTGAACCCTAAATTTGGTCTATCAGCGCCA
ATCCTCACTGTCCAT

UFO03208.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:25:36
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)gl-RK 5281 CG2671-RK 529..1645 9..1109 5015 97.7 Plus
l(2)gl-RJ 5528 CG2671-RJ 667..1783 9..1109 5015 97.7 Plus
l(2)gl-RI 5390 CG2671-RI 529..1645 9..1109 5015 97.7 Plus
l(2)gl-RK 5281 CG2671-RK 387..441 8..62 260 98.2 Plus
l(2)gl-RJ 5528 CG2671-RJ 525..579 8..62 260 98.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:25:34
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 14940..15713 865..91 3825 99.9 Minus
2L 23513712 2L 14692..14876 1045..870 460 94.6 Minus
2L 23513712 2L 17053..17136 92..9 420 100 Minus
2L 23513712 2L 19891..19945 62..8 260 98.2 Minus
Blast to na_te.dros performed on 2014-11-28 23:25:35 has no hits.

UFO03208.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:07:40 Download gff for UFO03208.5prime
Subject Subject Range Query Range Percent Splice Strand
l(2)gl-RA 543..1615 9..1069 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:47 Download gff for UFO03208.5prime
Subject Subject Range Query Range Percent Splice Strand
l(2)gl-RI 529..1601 9..1069 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:01:13 Download gff for UFO03208.5prime
Subject Subject Range Query Range Percent Splice Strand
l(2)gl-RI 529..1601 9..1069 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:01:13 Download gff for UFO03208.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 14665..14874 872..1069 92 <- Minus
2L 14933..15711 93..871 99 <- Minus
2L 17053..17136 9..92 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:47 Download gff for UFO03208.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 14665..14874 872..1069 92 <- Minus
arm_2L 14933..15711 93..871 99 <- Minus
arm_2L 17053..17136 9..92 100   Minus