UFO03208.5prime Sequence
1115 bp (1009 high quality bases) assembled on 2009-02-03
> UFO03208.5prime
CAGTCGACATGTTAAAGTTTATCAGAGGAAAAGGGCAGCAGCCCAGTGCT
GACAGACACCGCCTACAGAAGGACCTTTTTGCTTATCGTAAGACGGCACA
GCATGGCTTTCCTCATAAGCCTTCGGCTCTTGCGTATGATCCAGTTTTGA
AACTTATGGCAATAGGGACGCAAACAGGGGCTTTAAAAGTTTTCGGTCAA
CCCGGAGTTGAATTGTACGGTCAGCATACTTTGTTAAACAATTCAGCATC
GGAGCTTAATGTACAATTACTTGAATGGGTGTATGGAACTGGTCGCATAC
TTTCGTTGACGGCAGCGAATCAATTAATTCTATGGGAGCCAGTTGGAGCA
ACGTTGCTGCCAATCAAAACACTACCGTTTGACGGCAAACTTAAAAAAGT
TTCATCGCTGTGCTGTTCTCTCAGTAAGGATCTGCTATGGATTGGAACAG
AAGGTGGAAACATCTATCAACTGGATTTACATACATTTACCATTAAGGAG
CCTGTAATTTACCATGACGTTGTGCTAGAGCAGGTGCCACCAGCCTACAA
GCTAAATCCTGGTGCAATTGAGTCAATCCGCCAACTTCCAAACTCCCCTA
GCAAACTTCTAGTTGCATACAATCGCGGCCTTTGTGTTTTGTGGGATTTT
GAAAGCGCATCTGTCCAGCGAGCATACATAGCCCCTGGACATGGACAGAG
CGTTGGTCTTACAGTGAACTTCGAAAGGATCTGAATTTACCTGGTACCAC
GCTGATGGTTCATACGCCACTTGGAGCATAGATAACCCAGAACCGCCGTC
GAATGTTAATTATGTGCCTTATGGACCTGATCCATGCAAAAGCATAAATC
GACTGTACAAAGGCAGCGAAGATCCAACGATGTAATTGTTTTTCCGGCGC
ATGCCACGTCAGCATATGGTGATCACATTGTGTGTCCGTCACGCCAGCGA
TGACACAAAGTGTGTCTGACTTTACGTCTAAAGTGATTGACTTTTTTGTG
ACTTTGAAAATAATAGAAATGTCGCTGAGTTCTTGTTGTACTACTGAAAA
GGACTCTGGCCTACGATCTACTGAACCCTAAATTTGGTCTATCAGCGCCA
ATCCTCACTGTCCAT
UFO03208.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:25:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)gl-RK | 5281 | CG2671-RK | 529..1645 | 9..1109 | 5015 | 97.7 | Plus |
l(2)gl-RJ | 5528 | CG2671-RJ | 667..1783 | 9..1109 | 5015 | 97.7 | Plus |
l(2)gl-RI | 5390 | CG2671-RI | 529..1645 | 9..1109 | 5015 | 97.7 | Plus |
l(2)gl-RK | 5281 | CG2671-RK | 387..441 | 8..62 | 260 | 98.2 | Plus |
l(2)gl-RJ | 5528 | CG2671-RJ | 525..579 | 8..62 | 260 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:25:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 14940..15713 | 865..91 | 3825 | 99.9 | Minus |
2L | 23513712 | 2L | 14692..14876 | 1045..870 | 460 | 94.6 | Minus |
2L | 23513712 | 2L | 17053..17136 | 92..9 | 420 | 100 | Minus |
2L | 23513712 | 2L | 19891..19945 | 62..8 | 260 | 98.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:25:35 has no hits.
UFO03208.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:07:40 Download gff for
UFO03208.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)gl-RA | 543..1615 | 9..1069 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:47 Download gff for
UFO03208.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)gl-RI | 529..1601 | 9..1069 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:01:13 Download gff for
UFO03208.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)gl-RI | 529..1601 | 9..1069 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:01:13 Download gff for
UFO03208.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 14665..14874 | 872..1069 | 92 | <- | Minus |
2L | 14933..15711 | 93..871 | 99 | <- | Minus |
2L | 17053..17136 | 9..92 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:47 Download gff for
UFO03208.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 14665..14874 | 872..1069 | 92 | <- | Minus |
arm_2L | 14933..15711 | 93..871 | 99 | <- | Minus |
arm_2L | 17053..17136 | 9..92 | 100 | | Minus |