UFO03209.5prime Sequence
1154 bp (1043 high quality bases) assembled on 2009-02-03
> UFO03209.5prime
CAGTCGACATGCCGGGCAAGGGGAACAACCGCGATCGCATCCGGGATCCC
CGCGAGGAGATCCTGCTCGAGACGAACTTTGAGGACGACGGCGGAGTCCT
GACGCGCGCCTACAACGGAAATCCGTATAACCCGACCATCCAGAACCGTC
GGCGCAACTCGTACCGCTCGGATCACTCCTTGGACAGGTACACGGAGCGC
GGAGGCGAAGGAGAATGCTGCCAATCCTGCATGGCGCGTATTCCCTACGC
CACCCTGATAGCCACTCTGATGTGTCTCCTGGGAGTAGGAATCTTCTGCT
TCACCATGTACCGAGGAGCCTCTCTCACCGTTATAATGGTTGACCAGGTT
TTCCACCTACGCCTGATATGGATCGAAGCTGTGCAAATGATTTTCGTAAT
AATTGGAGCGGGCATGGCCGCCCTCGCATTTATGATCCTGTTCGTCGGAT
TTCTGGCCACCGGAGCCACCAGATACAAGGTTTACCGGGCGTGGCGGTCG
CGAGTGGGTGGGCGAATCTCGTGCGCCGTCCTTATGGGGATAACCTACCT
GCTAAACTTTGTGTGGAGTCTGATCCTTTGTTTCCTGGTAGTGGTTACCT
TCATCTACACCATGTTCTGGAACATGTGCACCAGTGTTGAGCACTCTCAA
AGCTGCATTGATCTGACGCAATTCCATTTTATGTTCCCGCCAAACACGAA
ACTGGAGGACATGAAGGTCTGCGAAAAGTACGAGATAAAGGCATTCTGCA
AAGACGGTGTTGAGAACGCCGAGGTGATGTTTATATTGGCCACTCTGTCC
ACCCTTTTGGTGCTGCTCAGTCTGGTCCACTACCTGATGTGCCTGTCTGC
TAACTACGCCCACATTCGGGACCACGAAAAGTTCCAGGAGCTACAGGAGA
TCCAGAACCTGAACGAGCTGGAGTACAGTGCCACCTCGAAGGATCGCTTC
AAGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGT
CATAATCATAATCATAATCATAATCATATCACAACTAGCCTAGGGAGAAT
CCTGTCATGACTAGTGCTTTGGAATTCTCACCAATAAAACGCCGGCCGCC
CACCCGAAGCGCCTGAACAAATCGAGTGGGGTTCTGAGGGTCATTACTGG
ATCT
UFO03209.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:49:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| M6-RF | 2370 | CG7540-RF | 624..1569 | 9..954 | 4700 | 99.8 | Plus |
| M6-RC | 2174 | CG7540-RC | 428..1373 | 9..954 | 4700 | 99.8 | Plus |
| M6-RB | 1945 | CG7540-RB | 199..1144 | 9..954 | 4700 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:49:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21511308..21511613 | 370..675 | 1515 | 99.7 | Plus |
| 3L | 28110227 | 3L | 21511670..21511948 | 676..954 | 1380 | 99.6 | Plus |
| 3L | 28110227 | 3L | 21510079..21510281 | 9..211 | 1015 | 100 | Plus |
| 3L | 28110227 | 3L | 21511089..21511251 | 209..371 | 815 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:49:38 has no hits.
UFO03209.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:07:38 Download gff for
UFO03209.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| M6-RB | 195..1143 | 1..953 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:41:38 Download gff for
UFO03209.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| M6-RB | 195..1153 | 1..963 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:30:38 Download gff for
UFO03209.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| M6-RB | 195..1153 | 1..963 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:30:38 Download gff for
UFO03209.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21511670..21511944 | 676..950 | 100 | == | Plus |
| 3L | 21510075..21510280 | 1..210 | 98 | -> | Plus |
| 3L | 21511091..21511250 | 211..370 | 100 | -> | Plus |
| 3L | 21511309..21511613 | 371..675 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:41:38 Download gff for
UFO03209.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21503175..21503380 | 1..210 | 98 | -> | Plus |
| arm_3L | 21504191..21504350 | 211..370 | 100 | -> | Plus |
| arm_3L | 21504409..21504713 | 371..675 | 99 | -> | Plus |
| arm_3L | 21504770..21505044 | 676..950 | 100 | == | Plus |
