UFO03210.5prime Sequence
1127 bp (1008 high quality bases) assembled on 2009-02-03
> UFO03210.5prime
CAGTCGACATGGGAATCTTTGGGCAGTCGTCGCCATTCGACGCCGACGTG
GAAAAGGCCACCAGCGAAACTAATACCAACGACAACTGGTCTCTGATTTT
GGATGTATGCGACAAGGTAACGACCAATCCCCGCCTGGCCAAGGATTGCC
TGAAGGCGGTGATGCGCCGCATGGGCCACACCGATCCTCATGTGGTGATG
CAGGCGATTACGCTTTTGGACGCCCTGTCCAACAACTGCGGAAAACCGCT
CCATTTGGAGGTGGCTTCACGGGATTTCGAGACGGAGTTCCGCCGCCTGT
TGGCCAAAGCACAGCCAAAGGTTTCACTGAAAATGCGCCAAGTGCTGAAG
AACTGGGCTGAAAACGACTATAAGAACGATCGAGAGCTCGACTTGATACC
CGCACTCTATGCCAAGCTGCGCCAAGAGGGATATGATTTCAAGAATCTTG
GCGATAAGACTAGCAAGACTGTTGCCGAAAAGGCCGCCGCCCTGCCCAAA
GATCCGAATGTGGTCAGCAGCCAGCAGGAAGAGGATGACATCGCCAAGGC
CATCGAATTGTCGCTGAAGGAGAACAAGGGCAGTCCAAAGACTGGGAGTG
TAGCAAGTACCGGCACCGCCAGTGCCTATCCCTCATTGTATCCATCTTTC
GCTGGAACCGGCTCGAGTGCACCGAGCGCCGAAGCCAGTTCCGCACCAGC
GCCAGAGCCGAGAAAGGTTCGAGCTCTGTACGATTTCGAAGCTGCCGAGG
AAAACGAATTGACCTTCTTTGCCGGCGAGATCATTCATGTGCTGGATGAT
AGTGATCCAAACTGGTGGAAGGGATACAATCAACGCGGCGAGGGTCTCTT
CCCCTCGAACTTTGTCACTGCCGATCTGTCCGTCGATCCCGAGCGGCTGG
ACATCATCAGCAGCATAGTCGGGCCGCCGCAGCCGGGCAACGAGAGTTGG
ATTCCGCTGCGGCACTGCAGCAAAGACTGAGCGGCAGCAGCTGCCGCCGC
AGCTCAGTCTGTGAGATCGACGAGTCAAAGAATCGACCGGCTGCCTGCAT
TGCTGCCGGAGGCGATCCGAAGATTCCCTCGCAGAAGCGACGAATTGCTG
CAGCTGAACAGGAGGTCCATCAGATGG
UFO03210.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:50:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Stam-RA | 2854 | CG6521-RA | 300..1425 | 9..1127 | 5200 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:50:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10859700..10860511 | 323..1127 | 3335 | 96.6 | Plus |
| 2L | 23513712 | 2L | 10859369..10859647 | 51..329 | 1395 | 100 | Plus |
| 2L | 23513712 | 2L | 10858835..10858877 | 9..51 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:50:05 has no hits.
UFO03210.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:07:53 Download gff for
UFO03210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Stam-RA | 301..1433 | 1..1127 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:41:52 Download gff for
UFO03210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Stam-RA | 293..1425 | 1..1127 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:30:51 Download gff for
UFO03210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Stam-RA | 293..1425 | 1..1127 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:30:51 Download gff for
UFO03210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10858828..10858877 | 1..51 | 92 | -> | Plus |
| 2L | 10859370..10859647 | 52..329 | 100 | -> | Plus |
| 2L | 10859707..10860511 | 330..1127 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:41:52 Download gff for
UFO03210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10858828..10858877 | 1..51 | 92 | -> | Plus |
| arm_2L | 10859370..10859647 | 52..329 | 100 | -> | Plus |
| arm_2L | 10859707..10860511 | 330..1127 | 97 | | Plus |
