UFO03211.5prime Sequence
1087 bp (1010 high quality bases) assembled on 2009-02-03
> UFO03211.5prime
CAGTCGACATGCGCTATCAATGCACCAATGATGCCGGCTATGATACGGAA
CACACGTCCCTGAACTCGGACTTCGATGAGGCCGAGCTGCGACGGGAGCT
ACTAAGAGATAAATGGAAACTGCTCTTTGACATGTTCGATCCCGAGGGTT
TTGGCGAAATATCAGTCGAGGAATTCCTGGAGGCCCTCAAGTCGCCGGAG
TTCCTGTCCCAAGTGCCTATGAACAAGCGGGAGCTGCTGCTGGAGCGGGC
AAAGAAGGCGAAGCTGCCCACAGGACCCGGCTACGTGACGTTCCAGGACT
TTGTGAATGTGATGAGCGGCAAGCGGACACGTAGCTTTAAGTGCGCCGTA
CACCATCGAGATCGTGAAGTCTGCTCCGAAAACGATTTCCAGCTGGTGCT
AAACGAACCGCCACTCTTTCGCAAAATGGTGCACGCCGTGGCCATGGAGA
TCCTGCCCGAGGAGCGGGATCGCAAGTACTACGCCGATCGCTACACCTGC
TGTCCGCCGCCTTTTTTCATCATCCTGGTTACTCTGGTGGAGCTGGGTTT
CTTTGTTTACCACTCAGTGGTCACGGGTGAGGCGGCGCCAAGGGGACCCA
TACCCTCGGACTCCATGTTCATCTACCGTCCCGATAAGCGTCACGAGATC
TGGCGCTTCCTCTTCTACATGGTACTCCATGCCGGGTGGCTGCATCTCGG
TTTTAACGTGGCAGTTCAGCTGGTTTTTGGGCTGCCACTGGAGATGGTTC
ATGGTTCCACGAGGATAGCCTGCATCTACTTCTCCGGGGTGCTGGCGGGA
AGCCTGGGCACTAGCATCTTTGACCCGGATGTGTTCCTTGTGGGCGCCAG
TGGTGGAGTATACGCTTTGCTAGCCGCCCACCTGGCCATGTGCTTCTCAA
CTATCACCAGATGCGTTATGGAGTCATCAAGCTGCTTCACATTCTGGTCT
TCGGTTCCTTCGACTTTGGGCTTTGCCATCTATGCTCGCTATGCTGGCGA
CGACTGCAGCTGGATCATCGGAGTGAAATTCCCTGACAATAAATCAGGCG
GAAACGGCGGGGTGCCTGTTTCGAATGTTGCCCAGTG
UFO03211.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:23:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| stet-RB | 2380 | CG33166-RB | 350..1422 | 9..1084 | 5080 | 98.6 | Plus |
| stet-RA | 1898 | CG33166-RA | 171..940 | 312..1084 | 3565 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:23:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1476580..1476995 | 955..541 | 2030 | 99.8 | Minus |
| 3L | 28110227 | 3L | 1477050..1477288 | 549..311 | 1165 | 99.2 | Minus |
| 3L | 28110227 | 3L | 1487754..1487936 | 316..134 | 900 | 99.5 | Minus |
| 3L | 28110227 | 3L | 1488098..1488190 | 110..18 | 465 | 100 | Minus |
| 3L | 28110227 | 3L | 1476417..1476521 | 1061..955 | 220 | 90.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:23:10 has no hits.
UFO03211.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:07:52 Download gff for
UFO03211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stet-RB | 343..1422 | 1..1084 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:45:18 Download gff for
UFO03211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stet-RB | 343..1422 | 1..1084 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:04:21 Download gff for
UFO03211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stet-RB | 343..1422 | 1..1084 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:04:21 Download gff for
UFO03211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1476582..1476993 | 543..953 | 99 | <- | Minus |
| 3L | 1477057..1477287 | 312..542 | 100 | <- | Minus |
| 3L | 1487759..1487935 | 135..311 | 100 | <- | Minus |
| 3L | 1488006..1488029 | 111..134 | 100 | <- | Minus |
| 3L | 1488098..1488195 | 12..110 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:45:18 Download gff for
UFO03211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1476582..1476993 | 543..953 | 99 | <- | Minus |
| arm_3L | 1477057..1477287 | 312..542 | 100 | <- | Minus |
| arm_3L | 1487759..1487935 | 135..311 | 100 | <- | Minus |
| arm_3L | 1488006..1488029 | 111..134 | 100 | <- | Minus |
| arm_3L | 1488098..1488195 | 12..110 | 97 | | Minus |
