UFO03212.5prime Sequence
1049 bp (961 high quality bases) assembled on 2009-02-03
> UFO03212.5prime
CAGTCGACATGTATGCCGCCTCGATCCTGATCCTGCACCTGACTTGGGCC
GTGGCCACGATCGCGGCCAACGGTGCCGGCCATAATGGCCCGGTGGCATC
CGGAGCAGGGCCTAACGGATTGCAGTGCCAGCCCATCGCCGTGTCCGCCT
GCCAAGGCCTCGGCTACAACATGACCGCACTGCCCAACCTGGCAGGTCAC
ACCAATCAGCTGGAGGCTGAGCTCCAGATTGCCAAACTGGTGCCACTAAT
AGAATCCGGCTGCTCGCGTCGCGCCCGCTTTTTGCTCTGCTCGTCTCTGT
TTCCGCTGTGCACGCCGGATGTGCCACGCCCCGTTGCCGCCTGCAAATTG
CTGTGCGAGACTGTTAGGGGCGAGTGTATGGAAAACGCTCCGCCGGAACT
GATGGAGCTGTGGCCTTCGTTCCTTAACTGCGACGGACTGCCGCAGCCGG
AGAAGCACGAGTTGTGCATGCAGATTCCACAGGAGGTGGCTGTGCCAGGC
GGGAGTCCAAGTGGTCCGCCCACCACTGGTTCACCTGGCGTCGAAGATCA
CCCGCAGACGTACCGCTTTTGGAAAAGCGGAGCATCTCCCACCTCTGACT
TGGCTGGCGTCTTGTGCCCGCAAAACTTTAGCGGCAGTCCCTTTAATCCG
GAGGAGTGCGTGCCCCAGTGTCAGCGGGACGCCTTCCACACGAGCTCTCA
GAAGAAGACGTCTGAGACCCTCATTCTAGGCCTCTCGGCCGTCTGCTTCG
TCCTGACACTGTTCGCCTTGGTGACCTTCTGGGCGGAGCCCACCAGGTTT
GGCTACCCCGAGAGACCAGTGCTCTTCCTGTGCCTGTGCTACAACTTCTT
CAGCGTGTGCTTTTCTGGAGCGATCGTGTTTCACAATCAAGCAAGGATGC
ATGACGTCGAGCTGCATGGCGGCTGATGCGACCGGGTTGCTTGCTGACGC
CCCTTTGCCTGGCCTCCTACATAACCACCTCCTATTTAAGCCTGTGTGCA
GCCAGCTGGGTGGCTGATATTTTTGCCTTTTGCTTCTAACCTGGCGCGT
UFO03212.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:15:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fz3-RC | 3250 | CG16785-RC | 285..1312 | 9..1038 | 4930 | 98.8 | Plus |
| fz3-RA | 2249 | CG16785-RA | 204..1231 | 9..1038 | 4930 | 98.8 | Plus |
| fz3-RB | 2304 | CG16785-RB | 474..1286 | 224..1038 | 3855 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:15:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 781473..782270 | 225..1022 | 3740 | 99 | Plus |
| X | 23542271 | X | 770229..770447 | 9..227 | 1095 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:15:44 has no hits.
UFO03212.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:07:50 Download gff for
UFO03212.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fz3-RA | 195..1233 | 1..1043 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:22:25 Download gff for
UFO03212.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fz3-RA | 197..1235 | 1..1043 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:55:14 Download gff for
UFO03212.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fz3-RA | 197..1235 | 1..1043 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:55:14 Download gff for
UFO03212.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 770222..770447 | 1..227 | 98 | -> | Plus |
| X | 781476..782288 | 228..1043 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:22:25 Download gff for
UFO03212.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 664255..664480 | 1..227 | 98 | -> | Plus |
| arm_X | 675509..676321 | 228..1043 | 98 | | Plus |
