UFO03213.5prime Sequence
1100 bp (981 high quality bases) assembled on 2009-02-03
> UFO03213.5prime
CAGTCGACATGTCCGTTCAAGACGTACTATGGATCGTACTCACGGTGCAG
TTGAGTTTTGGTCTTGCGTATTTTGAAAACAATCAAAGGACGCAGGACTA
TGATGTCGATAAAAATGGTTCTGTACACCACAAAAACTGGGTGCGTAACG
AAATGATGGACAGCTTGGGCTTGTACTGGCTCAAATGGTGGATAAACGCC
AACGAAAATAGCATTTACTTTGAAGTAACTGTTCACACACGAGGCTTTGC
CGGCCTGGGTTTCTCCAAGGATGGCCGGCTGGCCAGAGCGGATATGGTTT
TGATGTGGGTGGATGACGCCACAGGACATCCGAACGTCTTGGACTGCCAT
GGGGCGCTGCATCCTTCAAGCGGACCGCCGCTGCAGGACGATACTCAAAA
CTACGATGTCCTAGATGGCAAACAAAATGGGACGCACACAATCCTGAAGT
TTAAACGCAAAATTGAGACCTGTGACCCATTCGATATTCCACTCTCCGCT
GATACGTTTAAGGTACTGTGGTCCATTGGGGAAAATGATCCTATTCATGG
AAACTTGGATTGGCAAGGTCAGAGCAGAGGCGTGAAAGCTTTGCAATTGT
TTTCGCCAATGTTTACGAAAAATAGTCACTCGATCGAAGGCATCCAAAAA
TGGGACATAACTGTGAACAACGTAACAATTGATCGGTCAATGGATACACT
ATACTGGTGTAAAATAGTGCGACTACCAGAGTTAACTGGCAAACAGCATA
TAATTGGTTATGAGCCGCTGCTGTCTGGTAAATACGAGAGGAATGTTGTT
CACCACATGACCCTGTTTGAGTGTCAGTCCAAGATATACTCTGGATCCGA
TCCTTCGTCCTGGGACCTTTGGGTTAGAGTGCCGGCACAGTGTGCAACAG
CAACCTACTGACGCCACGCGACTGGATTCGTGCTCTACGCAGTTGCAGTT
TGTCTTGGATCTGATGACAGTTTCTACCTCCCACGCAGATCCCATGGGCG
GAGCATCTGAATAGCTATAATGCTGAATACCTACGATATTCCGATGGAAA
GATCGTGATCCTCCGATTCGAATACCCTACCACCATCTGCACTACGATCG
UFO03213.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:15:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5235-RB | 2521 | CG5235-RB | 140..1202 | 8..1051 | 4840 | 98 | Plus |
| CG5235-RA | 2711 | CG5235-RA | 140..1202 | 8..1051 | 4840 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:15:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16089763..16090253 | 498..8 | 2455 | 100 | Minus |
| 3L | 28110227 | 3L | 16089251..16089708 | 952..498 | 2140 | 99.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:15:37 has no hits.
UFO03213.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:07:33 Download gff for
UFO03213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5235-RA | 128..1167 | 1..1025 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:22:20 Download gff for
UFO03213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5235-RA | 133..1172 | 1..1025 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:55:10 Download gff for
UFO03213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5235-RA | 133..1172 | 1..1025 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:55:10 Download gff for
UFO03213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16089163..16089708 | 498..1026 | 96 | <- | Minus |
| 3L | 16089764..16090256 | 1..497 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:22:20 Download gff for
UFO03213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16082263..16082808 | 498..1026 | 96 | <- | Minus |
| arm_3L | 16082864..16083356 | 1..497 | 99 | | Minus |
