UFO03214.5prime Sequence
1164 bp (1052 high quality bases) assembled on 2009-02-03
> UFO03214.5prime
CAGTCGACATGGCCGAACGACCGAAAAATTTGTTTGCAACCGGATCCAGT
CGCTCCCGCAATCCCCCGGATCAGCTAAGCCTGAATAATCTTAGCATACG
CCATCCGCCCTCGTCCACGTCGTCCACTTCTTCGGGATCCACCTCCTCGG
GCTCAAGTTCCTCATCACAGCACAACCATGTGACCCGCTGTTTTGGTGCC
CAGCAGCCACAGCAAACCCCGCCGGTGGCCAGCAGTCAAGTGCCACCGGT
GCCGGCAGCATCGAGCAGCAGCGCTGCCGATCGTCACCGGGAGCGAATTC
GCCAGCAGGCCTGTGGCAAGCTACAGTTTGGTGAGGGCGGCGCTAATACA
CACACATTTACTTCAGACGATCTCGAGGATGAGGGCGAAATTGGACGCGG
TGCATTTGGGGCAGTCAACAAGATGACCTTTAAGAAATTGGACAAGGTGA
TGGCCGTCAAGCGCATTCGATCCACCGTAGACGAGAAGGAACAGAAGCAG
CTGCTCATGGATCTCGAGGTGGTCATGAAGTCCAACGAGTGCATTTACAT
TGTTCAGTTCTATGGGGCGCTTTTCAAGGAGGGTGACTGCTGGATTTGTA
TGGAGCTGATGGACACCTCTTTGGACAAGTTTTACAAGTACATCTACGAA
AAGCAGCAGCGCCACATTCCAGAGTCTATACTGGCTAAGATAACAGTGGC
CACGGTCAATGCGCTGAACTATTTGAAGGAGGAGCTAAAGATTATCCATC
GGGATGTGAAACCGAGCAACATTCTGTTGCACCGTCGCGGAGACATAAAG
CTGTGCGATTTTGGTATTTCGGGTCAGCTGGTCGACTCTATTGCCAAGAC
AAAGGATGCGGGCTGCAGCCCTACATGGCGCCGGAGCGCATTGATCCAGA
ACGTGCCAAGGGCTACGATGTACGAAGCGATGTTTGGTCATTGGGCATCA
CATTAATGGAGGTGGCGACTGGTAATTTCCCCTATTCGTAAATGGGACTC
TGTTTTCGAGCAAGTTGTTGCCAGGTTGTTGCAAGCGAACCGCCGCGGAC
TTTGGACATTCTTATAACGGGCATGGAGTTTCCAAGAGTTTGTGACCTTG
TTCAATACTTTGGCCTAATAAAAGGAGACGATCTGCACTCAGTATAGCGT
CTGCGGGAATTCAT
UFO03214.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mkk4-RC | 4110 | CG9738-RC | 286..1433 | 9..1158 | 5180 | 97.6 | Plus |
| Mkk4-RB | 2525 | CG9738-RB | 286..1433 | 9..1158 | 5180 | 97.6 | Plus |
| Mkk4-RA | 2698 | CG9738-RA | 286..1433 | 9..1158 | 5180 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8649478..8650319 | 880..40 | 4145 | 99.8 | Minus |
| 3R | 32079331 | 3R | 8649289..8649420 | 1012..880 | 615 | 99.2 | Minus |
| 3R | 32079331 | 3R | 1031175..1031293 | 893..1012 | 385 | 90 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:22:06 has no hits.
UFO03214.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:07:31 Download gff for
UFO03214.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mkk4-RB | 276..1389 | 1..1119 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:44:53 Download gff for
UFO03214.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mkk4-RA | 278..1391 | 1..1119 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:03:43 Download gff for
UFO03214.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mkk4-RA | 278..1391 | 1..1119 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:03:43 Download gff for
UFO03214.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8649279..8649419 | 881..1024 | 97 | <- | Minus |
| 3R | 8649478..8650319 | 40..880 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:44:53 Download gff for
UFO03214.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4475001..4475141 | 881..1024 | 97 | <- | Minus |
| arm_3R | 4475200..4476041 | 40..880 | 99 | <- | Minus |
