UFO03216.5prime Sequence
915 bp (59 high quality bases) assembled on 2009-02-03
> UFO03216.5prime
CAATCCACATGGTGAACCACCACTCGAACGGAGGCGGCAGTGCTGGAAAC
AGTAGCGGAAGCCTAATAGGAGGCGGTGCCCATGGAGGCGGCGGCGGAGG
AGGAGACTATTCCGGAGACGATCGCAGCGGAGGCGGCGAGGAGCGGGAGC
GTCTGGAGAGTGACTTGCACGACAAGCCCACCTACCTGCTGGAACACCTG
GCCACCTTCACGGTCAACAAGGAGTCCGGCATTGTGTATCCGGCGGACGG
AATGCGTCCCCTCCTTCATCTGGATAAGACCACGGGTATTTGGTCGCGAA
GATGCAGCTCTGCCTGGACTATCAGTGGGTGCTAATTATGGACTATGAAA
CAGGGAACATAATCGAAAGATTCCCCGCCTCCTTGGTTCAGGAGCCCACC
GCATTCACCTCGAATGACGCCATGGAGCTATACAACAACATTCTGGTCTT
TATCGTATACGGAGGCGGTGGTTCTCGCTCCGAGATGCACATATTCCAGT
CACAAAGTGTGTCCGCCGTTCACCTGGTTGAGGATCTGAAGCAGCTGAGA
AGCGGCAAGATGATAACGCAGCAGCGCGGTGCCACACCCACTCAATCAGG
AGGCGGAGGAGCCTCCAGCATGGCCATGATGATGAGCGAAACCTCCTCGT
CCTCGTCGCATAGTAGAGTGGAGCTGCACCAGCACAGGGAGCAGCGGGCA
CAGCGCGAGAGGGAGCGTGATCGAGACCGTGAGCGCGAAAGCCACCATCA
CATGCACCAAAGGAGCAGCATGCAACAGTATGGAATCTGTGCCTGAGTAT
GAGTTTCTGGCGATGACGTTGCCCACATTAGAGGCGAGACTGATTGGACA
CTGTGGGATTGGTGGCGGTGGCGCACATAGCGCTAGAGACTAGCTCAAGT
CCGCGAAATACGAGC
UFO03216.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:11:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| aru-RC | 2903 | CG4276-RC | 249..1142 | 8..896 | 4075 | 97.4 | Plus |
| aru-RD | 3026 | CG4276-RD | 372..1265 | 8..896 | 4075 | 97.4 | Plus |
| aru-RA | 2922 | CG4276-RA | 268..1161 | 8..896 | 4075 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:11:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 863757..864137 | 875..497 | 1675 | 96.6 | Minus |
| 2L | 23513712 | 2L | 864398..864746 | 355..8 | 1635 | 98.6 | Minus |
| 2L | 23513712 | 2L | 864195..864339 | 499..355 | 710 | 99.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:11:58 has no hits.
UFO03216.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:07:29 Download gff for
UFO03216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aru-RC | 246..1142 | 1..896 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:58:48 Download gff for
UFO03216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aru-RA | 265..1161 | 1..896 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:45:00 Download gff for
UFO03216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aru-RA | 265..1161 | 1..896 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:45:00 Download gff for
UFO03216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 863734..864134 | 500..896 | 95 | <- | Minus |
| 2L | 864195..864338 | 356..499 | 99 | <- | Minus |
| 2L | 864398..864749 | 1..355 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:58:48 Download gff for
UFO03216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 863734..864134 | 500..896 | 95 | <- | Minus |
| arm_2L | 864195..864338 | 356..499 | 99 | <- | Minus |
| arm_2L | 864398..864749 | 1..355 | 97 | | Minus |
