UFO03220.5prime Sequence
1126 bp (1034 high quality bases) assembled on 2009-02-03
> UFO03220.5prime
CAGTCGACATGAGTGACAAAACCGGCCGAGGACGGAGTAACCCCTCCACC
AGCCGGATTCCTCGCAGCGCACAAAGTCCGCGCCAAGCCTCAGTGGTCCA
CTCGCCCAGGACAAACTGTGCCTTTCGCCCGATTTTTCACGAGAGGAGCA
CTCACGAGGACGACCAGGTGCTCACCCAAGAACTATGGAAGCTGGCGCGT
AAATCGGGCACCCTGAATCTTTCCAACAAAGCATTGGCCAGAGTGCCCAA
GCGACTGTACGACATTAACGAGGCGGATGCGGACAGCAAGGCCGTAAATC
TAGAGCAGCTAACGATTAAAGAGGAGGATGCCTGGTGGAACCAAGTGCCA
TTGAACAACCTGGACCTGAGCTCAAACACCTTAACGCACATATCGCCAAA
GATCGAGAATCTGCAATCACTTACCGTGCTTACGCTGCACGATAATGCTT
TGGTGGAGTTACCACCGGAGATCGGCAAGCTGGAAAAGCTAGTGCGCCTT
AATGTGAGCCACAACAAACTCAGCCAGCTGCCGCGTGCGATGTACAGTCT
ACCGGAGCTGCGGCACCTCAACATCTCGTACAACGAGTTCGTCGAACTTA
ATCCGGACATCAGTGACCTTCACATGCTTGAGTTTTTGGACGGTGGGCAT
AACAATATTCAATCCCTGCCCGGTGGCATTGGGTTCCTGGTGCGTCTAAC
TGCGCTCTTGTTGCCCTATAATCACATCAAGGAACTGCCGCCCGATCTTG
TTAACATGCGCTCTTTGCAAAAGATTGATCTGATGCATAATGATCTGACC
AGCTTGCCGGAGGATATGGGCCTTTTGAGAAAGCTGGATTGCCTTTATCT
GCAGCATAACGACATACTGGACTGCCCGAGTTCGAGGGAACGAGGCCTTG
AACGAGCTACATGCCAGCATATTTCATCAGATCATACCAAAAGCTATGTG
TAGTACTTGCCACACCTGAGAAACTGGATTTGCGGGACAATAGATCACGG
AGCTGCCCGACGAGCTGTGCCTGCTGCGCATCTAAACGTCTCGATGTGTC
AATAATACGATCAGCGTGCTGCAGTCACATTTTCCTCTTGGCTCATCTGA
TAGCCTGCAGGTGGAGGAAATCCTTA
UFO03220.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:13:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| f-cup-RH | 2795 | CG9611-RH | 240..1373 | 5..1123 | 5265 | 98.5 | Plus |
| f-cup-RG | 2797 | CG9611-RG | 240..1373 | 5..1123 | 5265 | 98.5 | Plus |
| f-cup-RF | 2885 | CG9611-RF | 328..1461 | 5..1123 | 5265 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:13:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13699068..13699306 | 243..5 | 1195 | 100 | Minus |
| 3R | 32079331 | 3R | 13697834..13698039 | 639..434 | 1030 | 100 | Minus |
| 3R | 32079331 | 3R | 13698091..13698283 | 434..242 | 965 | 100 | Minus |
| 3R | 32079331 | 3R | 13697306..13697464 | 919..763 | 695 | 98.7 | Minus |
| 3R | 32079331 | 3R | 13697523..13697647 | 762..638 | 625 | 100 | Minus |
| 3R | 32079331 | 3R | 13697032..13697230 | 1117..928 | 515 | 94.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:13:40 has no hits.
UFO03220.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:07:26 Download gff for
UFO03220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9611-RB | 232..1369 | 1..1125 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:07:35 Download gff for
UFO03220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| f-cup-RF | 324..1461 | 1..1125 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:42:11 Download gff for
UFO03220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| f-cup-RF | 324..1461 | 1..1125 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:42:11 Download gff for
UFO03220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13697022..13697227 | 931..1125 | 93 | <- | Minus |
| 3R | 13697292..13697464 | 763..930 | 97 | <- | Minus |
| 3R | 13697523..13697646 | 639..762 | 100 | <- | Minus |
| 3R | 13697835..13698038 | 435..638 | 100 | <- | Minus |
| 3R | 13698091..13698281 | 244..434 | 100 | <- | Minus |
| 3R | 13699068..13699308 | 1..243 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:07:35 Download gff for
UFO03220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9523813..9524003 | 244..434 | 100 | <- | Minus |
| arm_3R | 9524790..9525030 | 1..243 | 99 | | Minus |
| arm_3R | 9522744..9522949 | 931..1125 | 93 | <- | Minus |
| arm_3R | 9523014..9523186 | 763..930 | 97 | <- | Minus |
| arm_3R | 9523245..9523368 | 639..762 | 100 | <- | Minus |
| arm_3R | 9523557..9523760 | 435..638 | 100 | <- | Minus |
