UFO03222.5prime Sequence
1013 bp (379 high quality bases) assembled on 2009-02-03
> UFO03222.5prime
CAATCCACATGCAAACCATCAAGTGCGTGGTCGTCGGCGACGGAGCCGTG
GGTAAGACATGCCTGCTCATCTCGTATACAACCAACAAGTTCCCGTCGGA
GTACGTGCCCACGGTGTTCGACAACTATGCGGTCACTGTGATGATCGGCG
GTGAGCCCTACCCACTGGGCCTGTTCGATACGGCCGGACTGGATGACTAC
GATCGGCTGCGTCCGCTCTCCTATCCGCAGACGGATGTCTTCCTTGTCTG
CTTTTCGGTGGTCAATCCCAGTTCCTTCGAGAACGTCAAGGAGAAGTGGG
TGCCCGAAATTACCCACCATTGCCAAAAGACGCCGTTCCTGCTGGTGGGC
ACACAGATTGATTTGCGCGACGAGAACAGCACGCTGGAGAAGCTGGCCAA
GAACAAGCACAAGCCCATCACCATGGAGCAGGGCGAGAAACTGGCCAAGG
AGCTGAAGGCCGTCAAGTACGTGGAGTGCTCGGCCTTGACACAGAAGGGC
CTGAAAAATGTATTCGACGAGGCCATCCTGGCCGCCCTCGAGCCACCAGA
GCCCACAAAGAAAAGGAAGTGCAAATTCTTAAAAGCAAGCTTTCTAGACC
ATTCATTTGGCGCGCGAGCCCAGGTAAGTGGTCATAATCGTAATCATAAT
CATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCT
TGCATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACA
ATCCAGATGGAGTTCTGAGGTCATTACTGTATCTATCATCAGGAGTCCAA
GCGAGCTCGATATCAACTTACGCCCCGCCCTGCCACTCATCGCAGTACTG
TTGTATTTCATTAAGCATTCTGCCGACATGTAAGCCGTCACAACGGCATG
ATGAGCCTGAATCGTCAGCGGCATCAGCACCTTGTCGCCTTGCGTATATA
TTTGCCCATGGCTGAAAACGGGGGCGATCAGTTGTCCATAGTGTCCCGTT
TAAATCAAAGCTG
UFO03222.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:48:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cdc42-RD | 2005 | CG12530-RD | 84..658 | 7..581 | 2755 | 98.6 | Plus |
| Cdc42-RC | 2078 | CG12530-RC | 157..731 | 7..581 | 2755 | 98.6 | Plus |
| Cdc42-RA | 1392 | CG12530-RA | 157..731 | 7..581 | 2755 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:48:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19697956..19698245 | 7..296 | 1390 | 98.6 | Plus |
| X | 23542271 | X | 19698305..19698591 | 295..581 | 1375 | 98.6 | Plus |
| 3L | 28110227 | 3L | 1301827..1302347 | 528..8 | 565 | 73.9 | Minus |
| 3L | 28110227 | 3L | 7434251..7434511 | 268..8 | 435 | 77.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:48:17 has no hits.
UFO03222.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:07:36 Download gff for
UFO03222.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdc42-RB | 228..809 | 1..584 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:40:31 Download gff for
UFO03222.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdc42-RC | 153..734 | 1..584 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:29:45 Download gff for
UFO03222.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdc42-RA | 153..734 | 1..584 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:29:45 Download gff for
UFO03222.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19697952..19698245 | 1..296 | 97 | -> | Plus |
| X | 19698307..19698594 | 297..584 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:40:31 Download gff for
UFO03222.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19591985..19592278 | 1..296 | 97 | -> | Plus |
| arm_X | 19592340..19592627 | 297..584 | 98 | | Plus |
