UFO03223.5prime Sequence
1047 bp (720 high quality bases) assembled on 2009-02-03
> UFO03223.5prime
CAGTCGACATGTCATCGCGAAGATGGTTCCACCCAACGATATCTGGCATC
GAAGCTGAGAAACTGCTGCAGGAGCAGGGATTCGACGGCTCCTTCCTCGC
CCGCCTCTCCTCCTCGAATCCGGGCGCCTTCACGCTCTCCGTGCGCCGCG
GCAACGAGGTGACCCACATCAAAATCCAAAACAATGGCGACTTCTTTGAT
CTCTACGGTGGTGAAAAGTTCGCCACACTGCCGGAACTGGTACAATACTA
CATGGAGAATGGCGAGCTAAAGGAGAAGAACGGCCAGGCCATCGAACTCA
AGCAGCCGCTGATCTGCGCCGAGCCCACCACGGAAAGATGGTTTCATGGC
AATCTTTCCGGAAAGGAAGCGGAAAAATTGATCCTGGAGCGGGGCAAGAA
TGGTTCGTTTCTCGTCCGTGAATCTCAGAGCAAGCCTGGCGACTTCGTCC
TTTTCGTGCGCACGGACGACAAAGTAACGCATGTCATGATTCGATGGCAG
GACAAGAAGTACGACGTCGGCGGCGGGGAATCCTTTGGCACCTTGTCGGA
ACTGATCGATCACTACAAGCGTAATCCCATGGTGGAGACGTGCGGAACCG
TGGTGCATCTGCGACAGCCATTCAACGCCCACACGAATCACGGCGGCCGG
CATCAATGCCCGGGTGGAACATCTGGGTCAAGGGAGGTTTCTGGGAGGAT
TTCGAAATCGCTGCAACAGGACAGTCTGTGACACATTCTCGCGCAACGAG
GGCTTACAAACAGGAGAACCGCCTCAAGAAATCGCTACCGCAACTATTTG
CCATACGACCACACGCGCGTCAAGCTGCTGGACGTGGAGCATAACGGGGC
CGGAACCCAAATACATCAATGCCAAACTACAAACGGCTTGCCCACCCGAC
GGCAAACTGTACAACATGAGCAGCTTCGTCGAAAAACCTGAACTGCTTGG
TGCTCTTCTGGCCCCGCCTGGCGGGTGGCCCAAAACCTGGGAAACTGGTC
CAACTGCCGCCTGTCAAAACTGAACTGGCTGGCAGTGCCCCGAGAAA
UFO03223.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:49:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| csw-RA | 4560 | CG3954-RA | 172..1170 | 9..1020 | 4180 | 95.3 | Plus |
| csw-RD | 7119 | CG3954-RD | 707..1692 | 22..1020 | 4115 | 95.2 | Plus |
| csw-RC | 4106 | CG3954-RC | 46..716 | 337..1020 | 2540 | 93 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:49:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2095008..2095199 | 21..212 | 960 | 100 | Plus |
| X | 23542271 | X | 2109227..2109409 | 493..676 | 840 | 98.4 | Plus |
| X | 23542271 | X | 2108378..2108543 | 336..501 | 815 | 99.4 | Plus |
| X | 23542271 | X | 2095269..2095396 | 210..337 | 640 | 100 | Plus |
| X | 23542271 | X | 2109481..2109600 | 681..804 | 345 | 92.7 | Plus |
| X | 23542271 | X | 2109725..2109872 | 801..953 | 305 | 87.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:49:27 has no hits.
UFO03223.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:07:35 Download gff for
UFO03223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| csw-RA | 165..1097 | 2..947 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:41:27 Download gff for
UFO03223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| csw-RA | 167..1099 | 2..947 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:30:31 Download gff for
UFO03223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| csw-RA | 167..1099 | 2..947 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:30:31 Download gff for
UFO03223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2095010..2095197 | 23..210 | 100 | -> | Plus |
| X | 2095270..2095396 | 211..337 | 100 | -> | Plus |
| X | 2108380..2108542 | 338..500 | 99 | -> | Plus |
| X | 2109235..2109414 | 501..682 | 98 | -> | Plus |
| X | 2109483..2109600 | 683..804 | 93 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:41:27 Download gff for
UFO03223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1989043..1989230 | 23..210 | 100 | -> | Plus |
| arm_X | 1989303..1989429 | 211..337 | 100 | -> | Plus |
| arm_X | 2002413..2002575 | 338..500 | 99 | -> | Plus |
| arm_X | 2003268..2003447 | 501..682 | 98 | -> | Plus |
| arm_X | 2003516..2003633 | 683..804 | 93 | -> | Plus |
