UFO03225.5prime Sequence
984 bp (756 high quality bases) assembled on 2009-02-03
> UFO03225.5prime
CAGTCGACATGTGGCGTCAAATCCTGTTTATTTTACCCACCCTGATACAG
GGGGTCCAGCGCTACGATCAGAGCCCCCTCGATGCGAGTCCGTATTATCG
CAGCGGCGGGGGATTAATGGCCAGTTCTGGGACCGAACTAGATGGACTGC
CACATCACAATCGCTGTGAACCCATCACCATATCGATCTGCAAGAATATA
CCATATAACATGACCATTATGCCAAATCTTATTGGCCATACCAAGCAGGA
GGAGGCGGGTCTGGAGGTCCATCAGTTTGCTCCGCTCGTGAAGATCGGCT
GCAGTGATGACCTCCAGTTGTTCCTCTGTTCCCTGTACGTTCCGGTCTGC
ACAATTTTGGAGCGACCCATTCCGCCTTGTCGATCTCTGTGCGAATCGGC
GCGGGTATGTGAAAAGTTAATGAAAACCTACAACTTTAACTGGCCGGAAA
ATCTGGAGTGCTCCAAATTTCCCGTCCATGGAGGCGAGGATTTGTGCGTG
GCGGAGAATACCACATCATCGGCCTCCACGGCGGCCACGCCCACAAGGAG
TGTGGCTAAGGTCACTACCCGTAAACACCAGACGGGCGTAGAAAGTCCTC
ACCGAAACATTGGATTCGTGTGCCCCCGTGCAACTGAAAAACTCCTCTGG
GGAATGGGGCTACAAACTAAAAAGTTTGGCGGAAAGGATCCTGCATGACT
GTGGAGCCCATGTCATGCCATGTTCTTCCCGGAAGAGAGAAAGGACTGTG
CTTCGATACTGGGTTGGATCTTGGGCAGCGGTCTGTGTAGCCACCTGCTT
GGTTTACGGTGCTCACCTTCTTGATTGACTCTTGCCGTTTCGCTACCCGG
AAAAGGGCCTTTGTCTTTTTTGCCGTTTGCTACTTTGTTGGTTGGATGTG
TCTACTTGGTGGACTGGGAACGGGGAACTCGTGCGTGCCCTAACATTTTC
TGCCGCCCGCAAAATCGGGCACCTGAAATAAAGT
UFO03225.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:32:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fz-RC | 3817 | CG17697-RC | 713..1675 | 9..975 | 4015 | 95.4 | Plus |
| fz-RA | 3817 | CG17697-RA | 713..1675 | 9..975 | 4015 | 95.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:31:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14275055..14275685 | 9..640 | 3095 | 99.7 | Plus |
| 3L | 28110227 | 3L | 14304900..14305010 | 691..801 | 430 | 96.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:31:59 has no hits.
UFO03225.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:07:17 Download gff for
UFO03225.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fz-RA | 681..1572 | 9..909 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:23 Download gff for
UFO03225.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fz-RB | 713..1604 | 9..909 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:21 Download gff for
UFO03225.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fz-RA | 713..1604 | 9..909 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:21 Download gff for
UFO03225.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14275055..14275726 | 9..686 | 98 | -> | Plus |
| 3L | 14304897..14305016 | 687..808 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:23 Download gff for
UFO03225.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14268155..14268826 | 9..686 | 98 | -> | Plus |
| arm_3L | 14297997..14298116 | 687..808 | 95 | -> | Plus |
