UFO03226.5prime Sequence
1115 bp (1014 high quality bases) assembled on 2009-02-03
> UFO03226.5prime
CAGTCGACATGAAGGTCTGCTGCATTGGCGCTGGTTATGTCGGCGGTCCG
ACCTGCGCGGTTATGGCGCTCAAATGCCCCGATATCGTGATAACTCTGGT
GGACAAGAGCTCCGAGCGGATTGCCCAGTGGAATTCGGATAAGTTGCCCA
TTTACGAGCCCGGCTTGGATGAGGTGGTGAAGAAGTGCCGCAATGTGAAC
CTCTTCTTCTCAACGGACATCGAGACGGCCATCAAGGAGGCGGACCTCAT
CTTCATCTCGGTGAACACGCCCACAAAAACCTGCGGCAATGGCAAGGGCC
GAGCGGCGGACCTCAAGTACGTGGAGAGCGCAGCGCGGATGATCGCCGAG
ATCGCGCAGTCCAACAAGATTGTGGTGGAGAAGAGCACGGTGCCCGTGCG
GGCGGCGGAGAGCATCATGCACATACTGCGAGCGAACCAGAAGCCGGGCA
TCCACTACGACATACTGTCCAATCCCGAGTTCCTCGCCGAGGGCACCGCC
ATCAATGACCTGCTAAATGCGGATCGTGTGCTGATCGGCGGCGAGGAGAC
GCCCGAGGGCCACCAGGCGGTGGAGAAGCTGTCGTGGATCTACGAGCACT
GGATACCCAAGCAGAACATACTCACGACGAACACGTGGAGCAGCGAGCTG
TCTAAGCTGGCGGCCAACGCATTCCTCGCCCAGCGAATCTCCAGCATCAA
TTCGCTGTCGGCAGTGTGCGAGGCCACGGGCGCAGATGTTTCCGAGGTGG
CGAGGGCCGTGGGTCTAGACTCTCGCATCGGTTCCAAGTTCCTGCAGGCG
TCGGTGGGCTTCGGCGGCAGTTGCTTTCAGAAGGACATCCTCAATCTGAT
TTACATCTGCGAGACCTCAATCTGCCCGAGGTGGCCGCCTACTGGCAGCA
GTGATCGACATGATGAGTACCAGAAGCGTCGATCTCGCAGAAATCATCGA
GAGTCTGTCAACACGGTGTCGGACAGCGGATAGCGATCTGGGCTTTGCTC
AGGAGATACCGGCGATCGCCGCGAACAGCGCATACGTGTGCAACTCTGCT
GGAGGAGGCCTCGGCTGATTCTACGATCGAGTGAACCTACGATCCTCATG
ACTCACGCTTCCAGG
UFO03226.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:15:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sgl-RA | 2275 | CG10072-RA | 209..1281 | 5..1058 | 4820 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:15:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6960619..6961328 | 998..297 | 3150 | 98.9 | Minus |
| 3L | 28110227 | 3L | 6964397..6964550 | 158..5 | 755 | 99.4 | Minus |
| 3L | 28110227 | 3L | 6961810..6961951 | 298..157 | 710 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:15:30 has no hits.
UFO03226.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:07:15 Download gff for
UFO03226.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sgl-RA | 250..1229 | 1..975 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:22:15 Download gff for
UFO03226.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sgl-RA | 206..1185 | 1..975 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:55:07 Download gff for
UFO03226.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sgl-RA | 206..1185 | 1..975 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:55:07 Download gff for
UFO03226.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6964397..6964553 | 1..158 | 98 | | Minus |
| 3L | 6961811..6961949 | 159..297 | 100 | <- | Minus |
| 3L | 6960644..6961327 | 298..975 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:22:15 Download gff for
UFO03226.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6953744..6954427 | 298..975 | 99 | <- | Minus |
| arm_3L | 6954911..6955049 | 159..297 | 100 | <- | Minus |
| arm_3L | 6957497..6957653 | 1..158 | 98 | | Minus |
