UFO03227.5prime Sequence
1104 bp (983 high quality bases) assembled on 2009-02-03
> UFO03227.5prime
CAGTCGACATGTCTCCAAAAGCGCTAAATGTGCGCGTCACGACAATGGAC
GCGGAACTGGAGTTCGCCATTCAGTCGACGACGACGGGCAAGCAATTGTT
TGACCAGGTGGTGAAGACGATCGGCCTGCGAGAGGTTTGGTTCTTTGGAC
TCCAGTACACCGACTCCAAGGGCGACTCCACATGGATCAAGCTGTACAAA
AAGGTGATGAACCAGGACGTGAAGAAGGAGAATCCCTTGCAGTTTAGGTT
CCGTGCCAAATTCTATCCCGAGGATGTGGCCGAGGAGCTGATCCAGGACA
TTACACTGCGTCTGTTCTACCTGCAGGTGAAGAATGCCATACTGACCGAC
GAGATCTATTGTCCGCCAGAGACATCCGTGCTGCTCGCCTCGTACGCCGT
CCAGGCGCGTCATGGTGACCACAATAAGACCACCCACACAGCCGGCTTTC
TGGCCAACGATCGCCTGCTGCCGCAGCGCGTCATCGACCAGCACAAGATG
TCCAAGGACGAGTGGGAGCAGTCGATTATGACCTGGTGGCAGGAGCATCG
CAGCATGCTGCGCGAGGATGCCATGATGGAGTATCTGAAGATCGCCCAAG
ACCTGGAGATGTACGGCGTTAACTACTTTGAGATCCGCAACAAGAAGGGC
ACGGATCTTTGGCTGGGCGTAGACGCACTGGGTCTGAACATTTACGAGCA
GGACGATAGGTTGACGCCGAAAATTGGTTTCCCATGGTCCGAGATTCGCA
ACATTTCGTTCTCGGAGAAGAAGTTCATCATCAAGCCGATCGACAAGAGG
CTCCGGACTTTATGTTCTTTGCGCCACGTGTCCGCATCAACAAGCGCATT
CTGGCCCTCTGCATGGGCAACCACGAGCTGTACATGCGTCGCCGCAAGCC
GGACACATCGATGTGCAGCAGATGACGCGCAGCGCGCGAGGAGAGGATGC
AACAGCAGACGTGAGAGCTGCAGCTGGCGCTGGCCGCACGCGACGCGCTG
AAAGAGCAGCAGGAGTACGAGGATCGCTAAAGCGATGCAGAGAATGGACG
TTCCAGCGCGATCTGCTGAGCCAGATGATCCGCGCTGGAAGACCTGAACC
TGCA
UFO03227.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:30:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Moe-RL | 2528 | CG10701-RL | 468..1546 | 9..1067 | 4885 | 98 | Plus |
| Moe-RD | 3003 | CG10701-RD | 341..1419 | 9..1067 | 4885 | 98 | Plus |
| Moe-RJ | 2401 | CG10701-RJ | 341..1419 | 9..1067 | 4885 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:30:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8875137..8875862 | 925..202 | 3530 | 99.7 | Minus |
| X | 23542271 | X | 8876571..8876753 | 205..23 | 915 | 100 | Minus |
| X | 23542271 | X | 8874831..8874894 | 1026..966 | 190 | 93.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:30:47 has no hits.
UFO03227.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:07:13 Download gff for
UFO03227.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Moe-RG | 215..1312 | 1..1078 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:40 Download gff for
UFO03227.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Moe-RJ | 334..1431 | 1..1078 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:40 Download gff for
UFO03227.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Moe-RJ | 334..1431 | 1..1078 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:40 Download gff for
UFO03227.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8875094..8875860 | 204..961 | 98 | <- | Minus |
| X | 8876573..8876752 | 24..203 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:40 Download gff for
UFO03227.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8769127..8769893 | 204..961 | 98 | <- | Minus |
| arm_X | 8770606..8770785 | 24..203 | 100 | <- | Minus |
