UFO03228.5prime Sequence
1105 bp (905 high quality bases) assembled on 2009-02-03
> UFO03228.5prime
CAGTCGACATGCCGCGTGTAGCCAAGCCGAAAGCCGCCGCTCCGGCCAAA
AAGGTGGTGTCGGCCAAGAAGGCCAAGAGCAAGCTGTACAAGATGCCGGA
GAAGGTGAAGGAGGGCACAGTTTTCACCGATTTAGCCAAAGGCCAGTGGC
GCATTGGACCCTCGATCGGAGTTGGAGGATTCGGTGAGATCTACGCGGCT
TGCAAAGTGGGTGAGAAGAACTACGATGCTGTGGTCAAATGCGAGCCACA
TGGCAATGGTCCTCTGTTCGTGGAGATGCACTTCTACCTGCGCAACGCCA
AGCTGGAGGACATCAAACAGTTCATGCAGAAGCACGGTCTCAAGTCCCTG
GGCATGCCCTACATACTGGCTAATGGTTCCGTGGAGGTCAATGGTGAAAA
GCATCGATTTATAGTCATGCCGCGCTACGGCAGCGATTTGACCAAGTTTC
TGGAACAGAACGGCAAGCGACTGCCCGAGGGCACTGTCTACCGACTGGCC
ATTCAGATGCTGGACGTCTATCAGTACATGCACAGCAACGGCTACGTTCA
TGCCGATCTTAAGGCAGCCAACATACTGCTGGGCCTGGAAAAAGGCGGCG
CTGCGCATGCGTACCTGGTGGATTTCGGCCTGGCCTCACACTTCGTCACC
GGTGACTTCAAGCCGGACCCCAAGAAGATGCATAATGGCACCATAGAATA
CACATCAAGGGATGCTCATCTGGGCGTGCCAACCAGACGAGCTGATCTGG
AGATACTCGGTTACAATCTCATCGAGTGGCTGGGCGCGTAGTTGCCGTGG
GTCACGCAGAAACTACTGGCTGTACCCCCCAGAGTTCAAAAGGCCAAGGA
AGCATTTATGGATAACATAGCGAGAGTCTGAGACGCTGTTTCCGAAGGAG
TGCCCCGCCAATTGGGATTTCATGAGTATGTCTCAAACTACACACAACCA
GTAGCCGGACTACGACAGTGTCTCAGTTGGTCTCAGTGCGCTGAGCAGCT
GAAATTCCAACCACGGAAATCTCACTTTAAATAGAAGCCCGGACGCTGCA
CAAAAATCTAGTGCGTCCCGAAGAACAGGCACAAGGCAGGAAGCAAAAAA
TTGAT
UFO03228.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:21:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ball-RB | 1965 | CG6386-RB | 102..1138 | 9..1030 | 4690 | 97.8 | Plus |
| ball-RA | 2027 | CG6386-RA | 164..1200 | 9..1030 | 4690 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:21:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26865487..26866234 | 981..243 | 3220 | 97.9 | Minus |
| 3R | 32079331 | 3R | 26866290..26866524 | 243..9 | 1160 | 99.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:21:06 has no hits.
UFO03228.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:07:12 Download gff for
UFO03228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ball-RB | 180..1231 | 1..1039 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:47 Download gff for
UFO03228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ball-RA | 158..1209 | 1..1039 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:13:41 Download gff for
UFO03228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ball-RA | 158..1209 | 1..1039 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:13:41 Download gff for
UFO03228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26866291..26866530 | 1..242 | 98 | | Minus |
| 3R | 26865502..26866234 | 243..967 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:47 Download gff for
UFO03228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22692013..22692252 | 1..242 | 98 | | Minus |
| arm_3R | 22691224..22691956 | 243..967 | 98 | <- | Minus |
