UFO03231.5prime Sequence
1135 bp (1035 high quality bases) assembled on 2009-02-03
> UFO03231.5prime
CAGTCGACATGTCCAGCTGGGCAGAACGCGTCCATAGGCGCGCCGCGGAT
TTGGGCAACGTGGTGACCTCCTGCGGCCACCCAGCCACCGCTCCCGCCTA
CCCGTACCGCCTCGAAAAGGTCAAATTCGGTGTGCCGCTGGAGGAGGTGT
GCAAGCACAACAACAACATTCCCGGGCCCCTGCTCGTCCTGATCCTCAAA
CTGAACAAGGAGTCACCGAACCGCCGCGATGTATTCCGCGCACCCGGCCA
CCAGGGCGCAATGAAGAAGCTCATCCACTTCCTGCAGGCCGGTCGGCTCG
TCAACGTGGACAACTATTCGGTGTTCACCATCGCCAGCGTGCTCAAGAAG
TTCCTGCGCAAGATCCCCAATGGGATATTCGGGCGCAGCGGCGAGATGGA
GCTGTTCGCCATCAATGATCTGCAAAACGAAGCCGAGCAAACGGAGCGAC
TGCACAGACTCTTCGGTTCGCTGCCGAAATACACACAGCATCTATTAGTT
CTACTGTTCGGCACATTCCGGGTTATCGCGAGCAATGCGGCCCACGCCTC
CACCGGAATGACCAGCGAGGCGCTGGGCGTTTCCGTGGCCCCCAGTTTCT
TTCAATCCTGCGTCAGCGATGGCAAAACCGCCCGCATGGAGGATGTGCTC
AAGTTCAAGGTCTCTACGAAGATTATGCAGAATATAATTGATAAGTTTGC
CACGCACGACATCTTCGGGCGCGACAACTATGAGTACTACGCCCGCGTCA
CAGGACGCATTCTCAAGGTGCAGGACGAGTGGATATGCAGCTTTCAGTAT
CCACCACCGCCACGTGGCAAGTTGGCTCAACAAAAATACGCATTGCAACA
TTCTTTGGAGGCGGAGAGACATGGCTGCAGTGCCAATGCGAGCGTTGGGG
CTTACTGGCCCAGGAGGAGTCCCGCTCGACGCCCGCCCTGCTGACCAGCT
CCAGTTCGCATTGGAGAACAGTGTCTGTCGCTGGGCGTTCCCCCGAACAC
TCGTTCATCGAGAAGCTGCCCCCGTCTTCTCAGTTTCGCTGGAGGACTGG
CATCTATGCCATGAACTCCTCGCGTTGCGGCGAGCGAAATGGCAATGGCA
CGGAATGTCACGGACTACACTATGTATGACTTGGC
UFO03231.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RhoGAP71E-RE | 4934 | CG32149-RE | 688..1820 | 8..1131 | 5215 | 98.2 | Plus |
| RhoGAP71E-RD | 5854 | CG32149-RD | 688..1820 | 8..1131 | 5215 | 98.2 | Plus |
| RhoGAP71E-RC | 5379 | CG32149-RC | 688..1820 | 8..1131 | 5215 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15589547..15589996 | 8..457 | 2250 | 100 | Plus |
| 3L | 28110227 | 3L | 15600413..15600619 | 455..661 | 1035 | 100 | Plus |
| 3L | 28110227 | 3L | 15600686..15600871 | 658..843 | 930 | 100 | Plus |
| 3L | 28110227 | 3L | 15601631..15601796 | 902..1064 | 480 | 94 | Plus |
| 3L | 28110227 | 3L | 15601233..15601295 | 844..905 | 265 | 98.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:21:31 has no hits.
UFO03231.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:07:06 Download gff for
UFO03231.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGAP71E-RC | 668..1804 | 8..1135 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:44:41 Download gff for
UFO03231.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGAP71E-RC | 688..1824 | 8..1135 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:03:27 Download gff for
UFO03231.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGAP71E-RC | 688..1824 | 8..1135 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:03:27 Download gff for
UFO03231.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15589547..15589996 | 8..457 | 100 | -> | Plus |
| 3L | 15600416..15600617 | 458..659 | 100 | -> | Plus |
| 3L | 15600688..15600871 | 660..843 | 100 | -> | Plus |
| 3L | 15601233..15601295 | 844..905 | 98 | -> | Plus |
| 3L | 15601635..15601826 | 906..1091 | 92 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:44:41 Download gff for
UFO03231.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15582647..15583096 | 8..457 | 100 | -> | Plus |
| arm_3L | 15593516..15593717 | 458..659 | 100 | -> | Plus |
| arm_3L | 15593788..15593971 | 660..843 | 100 | -> | Plus |
| arm_3L | 15594333..15594395 | 844..905 | 98 | -> | Plus |
| arm_3L | 15594735..15594926 | 906..1091 | 92 | -> | Plus |
