UFO03232.5prime Sequence
1152 bp (1006 high quality bases) assembled on 2009-02-03
> UFO03232.5prime
CAGTCGACATGGTCCTGGCATCTTTGTCCACTGGTGTGATTGCTCGCATT
ATGCATGGCGAGGTTGTGGATGCCCCGGTTCTCCAGATCCTGGCAATCAA
GAAGATTAACAGCGCAGCGGACTCAGAGCGCTATCGCATCCTAATCTCCG
ACGGCAAGTACTTTAACAGCTATGCGATGCTGGCCAGTCAGCTGAACGTG
ATGCAGCACAATGGAGAATTAGAGGAGTTCACCATTGTCCAGCTAGATAA
ATATGTGACCTCACTGGTAGGCAAGGACGGAGCCGGAAAACGCGTTCTCA
TCATTTCCGAACTAACTGTGGTGAATCCTGGCGCCGAGGTTAAGTCCAAA
ATTGGCGAACCCGTTACGTATGAAAATGCAGCCAAGCAGGATCTGGCGCC
TAAGCCAGCAGTAACATCTAATTCCAAGCCAATTGCCAAAAAGGAACCGA
GCCACAACAACAATAATAACATAGTAATGAATTCCTCTATTAATAGTGGA
ATGACACATCCCATTTCTAGCCTAAGTCCCTACCAAAATAAGTGGGTGAT
TAAGGCTCGCGTGACCTCAAAATCCGGCATTCGCACCTGGAGCAATGCCC
GCGGCGAGGGCAAGTTGTTCAGCATGGATTTAATGGACGAATCGGGCGAA
ATTCGGGCCACTGCCTTCAAGGAACAGTGCGATAAGTTCTACGACCTCAT
TCAAGTGGATAGCGTGTACTATATATCAAAGTGTCAATTGAAACCGGCAA
ACAAGCAGTACTCTTCGCTGAACAACGCCTACGAGATGACTTTTTCCGGT
GAAACAGTTGTCCAGCTTTGTGAGGATACCGACGATGATCCCATACCGGA
AATTAAGTACAACCTTGTTCCTATTTCCGATGTGTCGGGTATGGAAAATA
AAGCAGCGGTAGACACAATAGAATTTGCAAGGAGGGGGGCGAGTTGCATC
ATTCGTAGCTCGCACCACAAACAGGAATTCAGAAACGGGACATACCCTAG
TGACATGGAGTACCTCGGCCATCAGCTTGACCCTTTGGGGGGGATGGATG
CCGGTTAACTTGGACGGTCATGGTGCAGCCTGGTGAATCCTGGTCAAGGG
AACCCGCATACGATCAATGGCCGAAAGGTCCTTGGACCTCGGCGGGTACA
CT
UFO03232.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpA-70-RA | 2135 | CG9633-RA | 82..1220 | 9..1145 | 5200 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8263153..8263971 | 1109..290 | 3450 | 97.1 | Minus |
| 3R | 32079331 | 3R | 8264029..8264273 | 289..45 | 1225 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:21:14 has no hits.
UFO03232.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:07:05 Download gff for
UFO03232.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpA-70-RA | 72..1195 | 1..1121 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:44:34 Download gff for
UFO03232.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpA-70-RA | 74..1197 | 1..1121 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:03:14 Download gff for
UFO03232.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpA-70-RA | 74..1197 | 1..1121 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:03:14 Download gff for
UFO03232.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8263132..8263971 | 290..1127 | 97 | <- | Minus |
| 3R | 8264029..8264273 | 45..289 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:44:34 Download gff for
UFO03232.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4088854..4089693 | 290..1127 | 97 | <- | Minus |
| arm_3R | 4089751..4089995 | 45..289 | 100 | <- | Minus |
