UFO03233.5prime Sequence
1133 bp (1039 high quality bases) assembled on 2009-02-03
> UFO03233.5prime
CAGTCGACATGGCAACACTTAACAAATTCACAAAAACGCTGTCCATTGAT
GAAAAGGCGGAGATCAAGGAGAAATTCATAGAGTTGGATGCCAACAAAGA
TGGCTTCATCGATCTGCACGAGCTAAAGGATGCCCTCAACCAGGTGGGCT
TCAAGCTGGCCGGCTACCAGGTGCGCGAAATGATTGACGAGTACAAGGGC
AAACAGCTGACTGCCTTCCAGGGCAAATTGAATCTGGAGGAGTTCGAGGC
ACTGTGCCTGGACCTGAAGAGCAAGGATGTGGCCAGCACATTCAAGACGG
TCGTCTCCAAGAAGGAGAACTTGGAGACCCTGGGCGGCATGTCGAGCATT
TCGTCGGAGGGCACCACCCATTCGGTGCGCCTCGAGGAGCAGCTGGCCTT
CTCCGACTGGATTAACTCGAATCTGGGCCACGACAAGGATCTGCAACATC
TGCTGCCCATCGATAGCGAGGGCAAGCGCTTGTATCTGAGCATCAAGGAT
GGTATTCTGCTGTGCAAAATTATCAACCACTCCTGCCCGGACACAATCGA
TGAGCGTGCGATCAACAAGAAGAACCTCACCGTCTACCGGGAGTTTGAGA
ACTTGACCCTGGCCTTGGTTTCCTCCCAGGCGATTGGATGCAACATCGTA
AACATCGATGCCCACGATCTGGCCAAGGGCAAGCCACATCTGGTGCTGGG
TCTTCTCTGGCAGATCATCCGCATCGGTCTGTTTAGCCACATCACCCTGG
ACAGCTGTCCGGGATTGGCTGGCCTACTCTTCGACAACGAACGTCTCGAG
GATCTGATGAAGATGTCGCCGGAGGCCATCCTTTTGCGTTGGGTCAACCA
TCATTTGGAGCGAGCCGGCATCTCGAGGCGGTGCACCAACTTCCAGTCGG
ACATCGTCGATTCTGAGATCTATTCGCATTTGCTGAAGCAAATTGCCGGC
AATGATGCTGATGTCAATCTGGATGCCCTGCGGGAATCCGATCTGCAGTC
GCGCGCGGAGATCATGTTGCAGCAGGCCGCCAGCTCACTGCGCAGCTTCC
TCCGCCACAGGATGTCGTCACGGGTCTACAATCCATCTTAGCCTTCTGCC
TATCTGTCACACATCAGAATGAAAGCTGACGAT
UFO03233.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:13:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fim-RA | 3387 | CG8649-RA | 496..1590 | 9..1096 | 5250 | 99.1 | Plus |
| Fim-RC | 3269 | CG8649-RC | 452..1472 | 83..1096 | 4880 | 99 | Plus |
| Fim-RD | 3236 | CG8649-RD | 420..1439 | 84..1096 | 4875 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:13:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17288047..17289039 | 1070..82 | 4765 | 99.6 | Minus |
| X | 23542271 | X | 17301360..17301434 | 83..9 | 375 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:13:34 has no hits.
UFO03233.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:07:02 Download gff for
UFO03233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fim-RA | 537..1632 | 1..1088 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:07:31 Download gff for
UFO03233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fim-RA | 488..1583 | 1..1088 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:42:08 Download gff for
UFO03233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fim-RA | 488..1583 | 1..1088 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:42:08 Download gff for
UFO03233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17288025..17289037 | 84..1088 | 99 | <- | Minus |
| X | 17301360..17301442 | 1..83 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:07:31 Download gff for
UFO03233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17182058..17183070 | 84..1088 | 99 | <- | Minus |
| arm_X | 17195393..17195475 | 1..83 | 96 | | Minus |
