UFO03234.5prime Sequence
1080 bp (897 high quality bases) assembled on 2009-02-03
> UFO03234.5prime
CAGTCGACATGGACAAGATGCGGATATTGAAGGAAAGTCGCCCCGAGATA
ATCGTCGGTGGCAAATATCGGGTGATCAGGAAGATTGGAAGCGGATCGTT
TGGCGACATTTACCTGGGCATGAGCATCCAGAGCGGCGAAGAAGTGGCCA
TCAAGATGGAGAGCGCCCACGCCCGCCATCCGCAGCTGTTGTACGAGGCC
AAGCTGTACCGCATTCTGAGCGGCGGCGTTGGATTCCCTCGTATACGTCA
CCATGGCAAGGAAAAGAACTTCAACACCCTGGTCATGGACCTGCTGGGAC
CCTCGCTGGAGGATCTGTTCAATTTCTGTACGCGCCATTTCACAATCAAA
ACGGTTCTGATGCTCGTCGACCAGATGATCGGACGCTTGGAGTACATCCA
TCTCAAGTGCTTCATCCATCGCGACATCAAGCCGGATAACTTCCTAATGG
GCATTGGTCGGCACTGCAATAAGCTGTTCCTGATCGATTTCGGTCTGGCC
AAGAAGTTCCGCGATCCGCACACGCGCCATCACATCGTTTACCGCGAGGA
CAAGAACCTCACCGGCACTGCCCGCTATGCCTCGATCAATGCCCATCTGG
GCATCGAGCAGTCGCGGCGTGACGACATGGAATCGCTTGGATACGTGATG
ATGTACTTCAATCGCGGCGTACTGCCATGGCAAGGCATGAAGGCCAACAC
CAAGCAGCAGAAATACGAGAAGATCTCCGAAAAGAAGATGTCCACGCCCA
TCGAGGTCCTCTGCAAGGGCTCGCCGGCCGAGCTCTCCCATGTATCTGAA
ACTATTGTCGTAGCCTGCGCTTCGAAGAGCAGCCAGATTACATGTACCTA
CGTCAATTGTCTCGCATACTGTCAGAACCGCTGAACCATCCAGTATGACT
ACATCTACGACTGGACAATGCTGAAGCAGAAGACCCATCAGGTTCAACCC
AATCCTAAGCTATATCCTTGGAGCAATTGAACAGGGACAGGAAGAAGCAG
AACGGCAGCTCCTGATCGCGGACGCAGCTTTCTAGACCATTCGTTTGGCC
GCGCGCGCCCAGGCAGGTGTCCTAAATTCA
UFO03234.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:45:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CkIalpha-RG | 1997 | CG2028-RG | 202..1212 | 9..1023 | 4715 | 98 | Plus |
| CkIalpha-RF | 1997 | CG2028-RF | 202..1212 | 9..1023 | 4715 | 98 | Plus |
| CkIalpha-RD | 2232 | CG2028-RD | 437..1447 | 9..1023 | 4715 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:45:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12655377..12656148 | 87..860 | 3740 | 99.5 | Plus |
| 3R | 32079331 | 3R | 31057122..31057613 | 771..280 | 645 | 75.4 | Minus |
| X | 23542271 | X | 12656348..12656490 | 879..1023 | 445 | 91.8 | Plus |
| X | 23542271 | X | 12655238..12655317 | 9..88 | 400 | 100 | Plus |
| 2L | 23513712 | 2L | 17555095..17555188 | 504..411 | 230 | 83 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:45:25 has no hits.
UFO03234.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:07:23 Download gff for
UFO03234.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CkIalpha-RA | 278..1296 | 1..1027 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:38:44 Download gff for
UFO03234.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CkIalpha-RA | 334..1352 | 1..1027 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:39:54 Download gff for
UFO03234.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CkIalpha-RD | 433..1451 | 1..1027 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:39:54 Download gff for
UFO03234.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12655234..12655316 | 1..87 | 95 | -> | Plus |
| X | 12655378..12656152 | 88..864 | 99 | -> | Plus |
| X | 12656334..12656489 | 865..1022 | 91 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:38:44 Download gff for
UFO03234.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 12549267..12549349 | 1..87 | 95 | -> | Plus |
| arm_X | 12549411..12550185 | 88..864 | 99 | -> | Plus |
| arm_X | 12550367..12550522 | 865..1022 | 91 | -> | Plus |
