UFO03235.5prime Sequence
1137 bp (1027 high quality bases) assembled on 2009-02-03
> UFO03235.5prime
CAGTCGACATGCGCTTGCTCAGGCCCAGCTGGGCGGGGTTGCTGCGCGGA
AGGCACCACCAGCACCAGCGACATCACCGGCGTCTCCTGCTGACCACCAG
TCGCGGTAGCAATGGAGAAAGGGAGGAGCAGCAGCACAGCCAATGGAGTT
CTCCCGGCAGCAGGTCGGAGCAACTGTTCTATGCTGCCTTTTGGGCAGGT
GGCCTGACCCTAGGCTACCACTGGCTGACCGACAAGAAGAACCATGTGCT
GCTCGAGGGACAGAAGGTGGCCAGCGAGGAGGAACTAGAGGCAACGGCCC
GACTGTGGCACGTGACCAACAGAAGGGAGTTGCCCACCTACAGGGCAGAA
GAAGTGGAGCAGCACAACAGCGTAGAGAAACGCATTTGGGTCACCTACGG
CCTGGGCGTATACGATGTCACGGACTTTGTCGAGAATCATCCCGGTGGCG
ATAAGATCTTGATGGCCGCCGGCAGTGCCATCGATCCCTTTTGGGGCATC
TACCAGCAGCACAATACGCTGGAGGTTCTGGAGCTCCTAGAGGGCTTTCG
CATTGGCAATCTGGAGGGACTGGTGGTGACCAACGTGGACGATGAGCTGG
GCTCACCCTGGTCACAGGAGCCGCAGCGCCACGCCCTGCTCAAGCCAGCC
TCCAAGAGACCATTCAACGCTGAGCCACCCATTGGATTGCTGGCCGAGCA
GTTTTACACGCCCAACGAGCTATTCTATGTGCGCAACCACCTGCCAGTGC
CAGTGATAAATCCGGAGGATTACGAGCTGGAAATCGAAGGTGGCGCCAAG
GACAAGACCCTCACTCTGGACGGGATCAAGGCCCTGCCCAAGCACTCGGT
CACGGCGGCCATCATGTGCGGTGGCAATCGACGCTCTGAGATGACCAAAG
TCAAGGCCGTAAAGGGTCTTTCATGGGGAGCTGGTGCAGTGGGCAATGCC
AAGTGGTCAGGAGCTCGACTGTGCGACATTCTAAGAGAGCAGGCGTGCAG
CCCGGATGAAACCAAGCACGGTGATCTTCGAGGGTGCCGAACCTGGATCC
CCACTTCCACCGTATGGAGCATCATTACCACCTCGCAGGGCCTCGATCCA
AGGAAATGTCCTCTCTGGCCTTCGAAATAAACGACGA
UFO03235.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:48:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7280-RA | 2115 | CG7280-RA | 279..1405 | 9..1134 | 5200 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:48:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18847380..18848288 | 917..9 | 4545 | 100 | Minus |
| X | 23542271 | X | 18847154..18847319 | 1081..915 | 490 | 92.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:48:34 has no hits.
UFO03235.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:07:20 Download gff for
UFO03235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7280-RA | 257..1345 | 1..1091 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:40:39 Download gff for
UFO03235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7280-RA | 272..1360 | 1..1091 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:41:27 Download gff for
UFO03235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7280-RA | 272..1360 | 1..1091 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:41:27 Download gff for
UFO03235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18847144..18847318 | 916..1091 | 92 | <- | Minus |
| X | 18847382..18848295 | 1..915 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:40:39 Download gff for
UFO03235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18741177..18741351 | 916..1091 | 92 | <- | Minus |
| arm_X | 18741415..18742328 | 1..915 | 99 | | Minus |
