UFO03236.5prime Sequence
1092 bp (981 high quality bases) assembled on 2009-02-03
> UFO03236.5prime
CAGTCGACATGGAGAACTTAACGCAGAATGTAAACGAAACCAAGGTGGAT
TTGGGCCAGGAGAAGGAGAAGGAGGCGTCGCAGGAGGAGGAGCATGCCAC
CGCCGCCAAGGAGACCATCATTGACATTCCCGCCGCGTGCTCCAGTTCCT
CCAACTCCTCGTCGTACGACACCGATTGCAGCACGGCGAGCAGCACCTGC
TGCACCCGCCAAGGCGAGCACATCTACATGCAACGCGAGGCCATCCCGGC
CACGCCACTTCCGGAGTCGGAGGATATCGGCCTGCTGAAGTACGTCCACC
GCCAGCACTGGCCCTGGTTCATCCTAGTGATCTCCATCATTGAGATTGCC
ATCTTCGCCTACGACCGCTACACAATGCCCGCCCAGAATTTCGGGCTACC
CGTTCCGATTCCGTCGGATTCGGTGCTGGTCTATCGGCCGGACCGGCGTC
TGCAGGTGTGGCGCTTCTTTAGCTACATGTTCCTGCACGCCAACTGGTTC
CACCTGGGCTTCAATATCGTCATCCAGCTGTTTTTTGGCATTCCCCTGGA
GGTGATGCACGGCACGGCCAGGATCGGCGTGATCTACATGGCGGGCGTTT
TTGCCGGATCCCTGGGCACCAGTGTCGTCGACTCGGAGGTCTTCCTGGTG
GGCGCCAGCGGTGGCGTCTATGCCCTGTTGGCCGCACATCTGGCCAACAT
TACACTGAACTATGCGCACATGAAGAGCGCATCCACGCAACTCGGATCCG
TTGTCATCTTTGTCTCCTGCGATCTGGGCTATGCTCTCTACACCCAATAC
TTCGATGGAAGCGCCTTCGCCAAGGGTCCCCAGGTGTCGTACATTGCCCA
CCTGACGGGAGCCCTGGCAGACTAACGATCGGCTTTCTGGTGCTAAAGAA
CTTCGGTCACCGAGAGTACGAGCAGCTCATCTGGTGGCTAGCGTGGGCGT
CTACTGTGCCTTCACCGTCTTCGCATCGTTTCACTGATCAACACGGTGAC
CGCCTCAGCTGATGGAGGAGCAGGTGAGGTGATACCCAGCATTGTGCACG
ACCTGGGAGTGTCCGCAGCTTTCCTAGAACATCGTTTGGGCG
UFO03236.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:15:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rho-RB | 3000 | CG1004-RB | 341..1406 | 8..1064 | 5070 | 99 | Plus |
| rho-RA | 2531 | CG1004-RA | 341..1406 | 8..1064 | 5070 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:15:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1466488..1466907 | 343..762 | 2100 | 100 | Plus |
| 3L | 28110227 | 3L | 1465486..1465822 | 8..344 | 1685 | 100 | Plus |
| 3L | 28110227 | 3L | 1467039..1467350 | 762..1064 | 1060 | 95.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:15:34 has no hits.
UFO03236.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:07:18 Download gff for
UFO03236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rho-RA | 354..1432 | 1..1072 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:22:18 Download gff for
UFO03236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rho-RA | 335..1413 | 1..1072 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:55:09 Download gff for
UFO03236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rho-RA | 335..1413 | 1..1072 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:55:09 Download gff for
UFO03236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1465480..1465822 | 1..344 | 98 | -> | Plus |
| 3L | 1466490..1466907 | 345..762 | 100 | -> | Plus |
| 3L | 1467040..1467353 | 763..1068 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:22:18 Download gff for
UFO03236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1465480..1465822 | 1..344 | 98 | -> | Plus |
| arm_3L | 1466490..1466907 | 345..762 | 100 | -> | Plus |
| arm_3L | 1467040..1467353 | 763..1068 | 95 | -> | Plus |
