UFO03238.5prime Sequence
1103 bp (983 high quality bases) assembled on 2009-02-03
> UFO03238.5prime
CAGTCGACATGGCGGGAGAAATGCCCATTAAGCCCTGGGACGGACTGCGA
TACGCTTTCGAATCATGTGACGCAATGCTTCGTGACTCAGAAACAAAGGA
GCTGACCAAGAAAAGCTTTGATTTGGCTATATTAGATGGAGCTTTCCCAG
AGTGCTTCTTGGGATTAATGTACGACTTCAAGATTCCATTTATGTACATA
AACACGGTGGGATTCTACACAGGCAGTATCTCGACTGCAGGAAATCCCGT
TAGCTACGCTATTACTCCCAACTTCTATTCTCGATTTACGGACACAATGA
ATCTTTACGAACGTGCTATTAATACGGCCATGCAGATTGGACAAACACTG
ATGCACATGTATGTTATGCGTCGGACTCACCTTGTGATGCGAGAGCACTT
GGGTACTCAAATCCCGCATCCTTACGAAATGTCGCGCAACGTGAGTTTCA
TTTTGCAAAATGGACACGCAGTTTTGTCTTATCCTAGAGCCTTTAATCCG
AATGTAGCAGAAGTGGCTTGCATTCATTGTAGGCCAGCTAGAAAACTTCC
TAGAAACCTTGAGGAATTCATCGGTGCTTCTGGAGCATCTGGATTTATTT
ACGTTTCTATGGGTTCCTCCGTAAAGGCCGCGAACATGCCAGAGGCGTTG
CGTCACATGCTTGTAAAGACCTTTGCACGTCTTCCCTATCATGTGCTATG
GAAGTATGAAGGCAGTTCGACAGATATAAAAGACATCACATCAAACGTAA
AACTTTCACGGTGGTTACCGCAGCAGACATTTTGGGACATCCCAAGCTTA
GAGCGTTTGTAACACATGGAGGCTTGCTAAGCATGTTTGAGACGGTATAT
CACGGAGTACCCGTTGTTACATGCCGGTATTCTGCGACCACGATGTTAAC
TCAGCCAGCCGAGTCGATGGATATGCAATAAAGTAGATCTCAGACGCTGT
CAGCATCAGTGTACAAGCTATTATGAAAGTGATCACATCCTCGCTAAGAA
ATCAGCACGACATCGGCAAAGCTGTCTGACAGGCTCACAGCCTAATCTGC
CAATATACTGACGAAATGTGCTGCACATATGGCCTTATCCTCTACAGATC
ATT
UFO03238.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30438-RE | 2226 | CG30438-RE | 371..1491 | 8..1098 | 4825 | 97.1 | Plus |
| CG30438-RD | 2310 | CG30438-RD | 455..1575 | 8..1098 | 4825 | 97.1 | Plus |
| CG30438-RC | 2732 | CG30438-RC | 877..1997 | 8..1098 | 4825 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5547987..5548663 | 359..1020 | 2705 | 97.8 | Plus |
| 2R | 25286936 | 2R | 5547628..5547924 | 63..359 | 1485 | 100 | Plus |
| 2R | 25286936 | 2R | 5267807..5268042 | 316..63 | 755 | 87.4 | Minus |
| 2R | 25286936 | 2R | 5267510..5267669 | 907..741 | 380 | 85.8 | Minus |
| 2R | 25286936 | 2R | 5539375..5539429 | 8..62 | 275 | 100 | Plus |
| 2R | 25286936 | 2R | 5267673..5267723 | 711..661 | 210 | 94.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:56:59 has no hits.
UFO03238.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:16:32 Download gff for
UFO03238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30438-RC | 822..1865 | 1..1033 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:22:56 Download gff for
UFO03238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30438-RC | 873..1916 | 1..1033 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:39 Download gff for
UFO03238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30438-RC | 873..1916 | 1..1033 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:39 Download gff for
UFO03238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5539371..5539429 | 1..62 | 95 | -> | Plus |
| 2R | 5547628..5547924 | 63..359 | 100 | -> | Plus |
| 2R | 5547988..5548675 | 360..1033 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:22:56 Download gff for
UFO03238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1426876..1426934 | 1..62 | 95 | -> | Plus |
| arm_2R | 1435133..1435429 | 63..359 | 100 | -> | Plus |
| arm_2R | 1435493..1436180 | 360..1033 | 97 | | Plus |
