UFO03239.5prime Sequence
1156 bp (1048 high quality bases) assembled on 2009-02-03
> UFO03239.5prime
CAGTCGACATGTCCTTCTACACGAGTAAGACGGATGTGACTTCCATTTTA
AAGACGTTTTCTGGCGTAAAACGAAATCAGGCAAATGCCGTGGCCATCAA
CAAAGTTCGATTTTCCACACCCAAAGAGAAGGGGCTCGCAGAATCAGTGC
GCGTTGCCCTAGAAGAACGAAATTTCCATCTGGTCAAGGAGTTCACATAC
TTCCTCCGGGAAGCAGAACTCAGCGATGATGAGGTTGTAATAATCATAAA
AGATGCTAAACGAATTGTTCATAATTTGACTCCAGAATTTGTAACCGTTG
TCGAGGCGTTACTGTCCCTTAACTGGAAGAAAAGAAGTTCAGAGATAATC
GAAGCTTATACTGAATTTTGTATCGAACTAATGGTGACCCATAATAGATA
TTTACCGATTGGAGTCTCTAAACTAATTGTCCACTGGATTCCTGGAGATA
TGGATGAATCCGATTGGGTCCACGGATGCCCTTCGGAGCACGTGCGAAAT
GAGTTGAAACCCATCCATAAAGTACTGGATCGCATCTTAACTGCCGTGCC
AATGGCTTTCGATATTATCATAGATGCCATATCCGCCAAATTCCCCTATT
TCAAAAAGCCGTACCATGTGACGGCAGGGTATCTGTATAACGTGCTTTGG
TTATTAGAATACAAGCCTATTTTCGAAGAACTTGTTTTTCAACTAGTTTT
ACAAAAGCTTTTATTATTAGATGTTAATGCTCCAAAAGATGAAATTGAAT
TAGAAATGAATGATGAGGAGGAAAAGGTGGAAGCGGACACCTTGTTTGAA
ATCGACGATGTATGCGCCGAAAATGTACCCAAATCTGAAAATCTGTGAGT
CATCCTGTTGGCAAACCTTGGATGTATGCCTATTCTTGCTTTATAAGTTT
TTGATGGCAAATGTCGCCTTAATGAAAATAGTAGCGAGAACAGCGAAGGA
CTGCCAACCGATTGTTTAGATGTTACTTTATTTGTTCGACGAGGTTGTTA
TGCCAGCCACAACACGCATCATGTTGCAATTCATCCTATTTTATGCAACC
AGTCTGGCGGTCGGTAAATCCGAAGCTTTTCCTGGATCTTATGACGAAGG
TCCAAATCGATGTATCCTGTATTCGCACTGCTGCGGGTAACATGGCTAGC
TTTAAT
UFO03239.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:27:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tif-IA-RA | 2140 | CG3278-RA | 224..1384 | 9..1153 | 5140 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:27:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 22250372..22250854 | 225..707 | 2415 | 100 | Plus |
| 2L | 23513712 | 2L | 22253194..22253573 | 707..1081 | 1370 | 96.1 | Plus |
| 2L | 23513712 | 2L | 22250099..22250315 | 9..225 | 1085 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:27:19 has no hits.
UFO03239.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:16:30 Download gff for
UFO03239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tif-IA-RA | 222..1274 | 9..1056 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:04 Download gff for
UFO03239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tif-IA-RA | 224..1276 | 9..1056 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:02:11 Download gff for
UFO03239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tif-IA-RA | 224..1276 | 9..1056 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:02:11 Download gff for
UFO03239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 22250099..22250314 | 9..224 | 100 | -> | Plus |
| 2L | 22250372..22250853 | 225..706 | 100 | -> | Plus |
| 2L | 22253194..22253548 | 707..1056 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:04 Download gff for
UFO03239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 22250099..22250314 | 9..224 | 100 | -> | Plus |
| arm_2L | 22250372..22250853 | 225..706 | 100 | -> | Plus |
| arm_2L | 22253194..22253548 | 707..1056 | 97 | == | Plus |
