UFO03240.5prime Sequence
1124 bp (1030 high quality bases) assembled on 2009-02-03
> UFO03240.5prime
CAGTCGACATGGTTGACTACTATAAAATTTTGGATGTTTCGCGATCCGCT
ACCGATAGTGAAGTGAAGAAGGCATATCGAAAACTGGCACTAAAATGGCA
CCCAGACAAGAATCCCGACAACCTGGATGAGGCCAACAAACGCTTCCGCG
AGCTGTCCGAAGCCTACGAAGTTCTTTCCGATGAGAAAAAGCGTCGCATA
TACGATGAGTATGGCAAAGATGGACTGGGCGATCGTGGCCAGAGTCGCTC
GCATGCCCGCCACCATTATAGCACACACGATTTCGATGACTTCGATATTT
TGGGCGGCTTTCAGTTTGCATTCCGCCCGCCCGAGGAAGTGTTCCGTGAG
TTCTTCGGCATCCACTCGCCCTTCGCCGACTTATTCCGAGATGCCAATGG
ACATTCGAATGGCAGCACAAGCGGCTCGAGTGGCAGTCGACGCAATGGCG
GCAGCAGTGGATCATCTCGCCACCATCATCATCACCACCAGCACAAAGTG
GCCAGTCCGTTCGGGGCTCCAATGCTTAACTACTCAATGATGGACTTCTT
TATGCCCACCAGCGGCTTCACCTCGTTCTCGTCGATGACCCACGGCAATG
GCAGCAGCGGTGTCACCCACATCTCCAGCGGACCCGGTGCCAGTGTCAAG
CGCACCTCCACTTCGACGGTGTTTGTGAATGGCAAGAAACTGATGACCAA
ACGGGTCGTCGAAAACGGCAAGGAAACTGTCTTTTCATATGAAAATGATG
TTCTGAAATCAAAGACTGTGATGGGCTCCCTTCAAGCAAGCTTTCTAGAC
CATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAA
TCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGC
TTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGACA
AATCCAGATGGAGTTCTGAGTCATTACTGGATTTATCAACAGGATTCAGC
GAGCTCGATATTCAAATTACGCCCCGCCTGCCACTCTTCGCAGTTACTGT
TTTTATTCATTAGCATCTTGCGAACTTGAGCATTCCAACGCATTGGTGGA
ACTTGAATCGCAACGCATCAGCAC
UFO03240.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:14:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mrj-RA | 1929 | CG8448-RA | 180..958 | 7..785 | 3895 | 100 | Plus |
| mrj-RC | 2143 | CG8448-RC | 394..1172 | 7..785 | 3895 | 100 | Plus |
| mrj-RB | 2126 | CG8448-RB | 377..1155 | 7..785 | 3895 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:14:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16204441..16204756 | 704..389 | 1580 | 100 | Minus |
| 2R | 25286936 | 2R | 16204825..16205032 | 390..183 | 1040 | 100 | Minus |
| 2R | 25286936 | 2R | 16205710..16205819 | 183..74 | 550 | 100 | Minus |
| 2R | 25286936 | 2R | 16204300..16204382 | 785..703 | 415 | 100 | Minus |
| 2R | 25286936 | 2R | 16205901..16205967 | 73..7 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:14:49 has no hits.
UFO03240.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:16:28 Download gff for
UFO03240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mrj-RB | 318..1106 | 1..792 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:15:15 Download gff for
UFO03240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mrj-RB | 372..1160 | 1..792 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:04:25 Download gff for
UFO03240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mrj-RB | 372..1160 | 1..792 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:04:25 Download gff for
UFO03240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16204295..16204381 | 704..792 | 96 | <- | Minus |
| 2R | 16204442..16204754 | 391..703 | 100 | <- | Minus |
| 2R | 16204825..16205031 | 184..390 | 100 | <- | Minus |
| 2R | 16205710..16205819 | 74..183 | 100 | <- | Minus |
| 2R | 16205901..16205972 | 1..73 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:15:15 Download gff for
UFO03240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12093215..12093324 | 74..183 | 100 | <- | Minus |
| arm_2R | 12093406..12093477 | 1..73 | 95 | | Minus |
| arm_2R | 12091800..12091886 | 704..792 | 96 | <- | Minus |
| arm_2R | 12091947..12092259 | 391..703 | 100 | <- | Minus |
| arm_2R | 12092330..12092536 | 184..390 | 100 | <- | Minus |
