UFO03241.5prime Sequence
1132 bp (1023 high quality bases) assembled on 2009-02-03
> UFO03241.5prime
CAGTCGACATGACGTCTATGGAGCAAAATCGTTTACAAAACTTCAAAAAC
AAAGGGAAAGACCAGGATGAAATGCGACGTCGGAGAAATGAAGTCACCGT
TGAGCTGAGGAAGAACAAGCGCGAAGAGACCATTCTCAAGCGTCGCAATG
TGCCCAATTTGGACTCGAACACAGATGAGGAGGAGCAGTTGTCCTCGTCC
ATTGACCTGAAGAAGCTGGCAAAGGCAGCCGCAGACGCCACCAAGCCGGA
ACAGCAACTGGCCGCTGTTCAGGCTGCCCGCAAGCTGCTGTCGTCGGACA
AGAATCCACCCATCAACGATCTGATCCAAAGCGACATTCTGCCCATCCTG
GTGGAGTGCCTCAAACAACACAATCACACAATGCTCCAGTTCGAGGCCGC
CTGGGCCCTGACCAACATTGCCTCTGGCACATCGGCTCAGACCAACGAGG
TTGTTGCCGCCGGTGCCGTGCCGCTCTTCCTTCAACTTCTCAACTCGCCC
GCTCCCAATGTTTGCGAACAAGCCGTGTGGGCCCTGGGCAACATCATAGG
CGATGGTCCTTTGCTCCGCGATTTTGTCATTAAGCACGGAGTCGTGCAGC
CACTTTTGTCGTTCATCAAGCCAGACATCCCCATCACATTCTTGCGCAAT
GTAACATGGGTTATTGTGAATTTGTGCCGCAACAAGGATCCGGCTCCCCC
GACAGCCACCATTCATGAGATCCTGCCCGCACTCAATGTGCTCATTCATC
ACACCGACACGAACATCCTGGTGGACACGGTCTGGGCCATCAGCTATTTG
ACTGACGGTGGCAACGATCAGATCCAGATGGTCATTGAAAGTGGAGTTGT
ACCCAAGCTGATACCACTGCTGGGCAACAGCGAGGTCAAGGTACAGACAG
CCGCACTGCGGGCTGTGGCATATTGTGACTGGATCGGATGAGCAGACACA
GTTGTGCTCACTACGACGCGCTCTCTACTCCCGGGCTGCTCTCGCATCCC
AGAGAAGATCGAAGAGCGTTGGTCTTTCATATACGCTGAATCATCGCAGT
GCAGGCGTTATTACGTGGTCTCTGCCAAATTATCGGACTTAGCAAGCCAG
TCAGAACCAGAAGAGGCTGCTGGCATGCACTG
UFO03241.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:33:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Kap-alpha3-RD | 2261 | CG9423-RD | 207..1314 | 9..1085 | 4845 | 97.2 | Plus |
| Kap-alpha3-RC | 2663 | CG9423-RC | 129..1236 | 9..1085 | 4845 | 97.2 | Plus |
| Kap-alpha3-RB | 2728 | CG9423-RB | 194..1301 | 9..1085 | 4845 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:33:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9576178..9576709 | 975..448 | 2465 | 98.9 | Minus |
| 3R | 32079331 | 3R | 9576766..9577148 | 451..69 | 1915 | 100 | Minus |
| 3R | 32079331 | 3R | 9577207..9577267 | 69..9 | 305 | 100 | Minus |
| 2L | 23513712 | 2L | 10058201..10058255 | 379..433 | 200 | 90.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:33:46 has no hits.
UFO03241.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:16:24 Download gff for
UFO03241.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kap-alpha3-RC | 172..1196 | 1..1016 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:31 Download gff for
UFO03241.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kap-alpha3-RB | 186..1210 | 1..1016 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:13:20 Download gff for
UFO03241.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kap-alpha3-RB | 186..1210 | 1..1016 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:13:20 Download gff for
UFO03241.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9576132..9576707 | 450..1016 | 98 | <- | Minus |
| 3R | 9576768..9577148 | 69..449 | 100 | <- | Minus |
| 3R | 9577208..9577275 | 1..68 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:31 Download gff for
UFO03241.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5401854..5402429 | 450..1016 | 98 | <- | Minus |
| arm_3R | 5402490..5402870 | 69..449 | 100 | <- | Minus |
| arm_3R | 5402930..5402997 | 1..68 | 95 | | Minus |
