UFO03245.5prime Sequence
1118 bp (1014 high quality bases) assembled on 2009-02-03
> UFO03245.5prime
CAGTCGACATGATGTTGCAATCCTTGAGTCTGCACGCGGATAAACTAAGC
GGCAATTCACCAGCAGCAGCAGCAGCAACTGGAGCAGCAGCAGCAACATC
AGAGGCAACAGCAGTAGCATCCGCAGCAGCAGCAACAACAATGCTTGCAA
CGGCACCTGTTGCCCATGTTGCTAATGGCAACAACAGCAATTCGAGTGCC
GGCAGCAGCAGCAACAGCAACAGCAGCAGCAACAACCACAGCCTCTACAG
CAATAACAATTTAAATACAGGCAACAATAGCCAGCAGCAGCAGCAGCAGC
AGCAGCAACATCCGCAAATACTGCCGGTCAAGTACGAGTATTTAGAGAAT
CTAACGAGCTCGGGCGCAACTTCAGGTGCCATTGCAGCGACAACAACTTT
CACGGGAGCTGCGAAAAGTTTTCATCCCTATTTGCGGCCCACCGGCAGTG
GCAGCAACAGCAACAACAGCATCGCAGCATTATCTACAACAACGGCAGCA
ACAGCGGCTAAAATGTCGACAACATTGTTTGAGACACTCTTGCACAACCA
AATAAATTCCAGCCCAATAGCACTGCCAGCAGCAACGGCAATCGCAGCAA
TATCTGCAGCAGCAACAGCAGCAACAGCAACACCAGGCACCGCAGCAACC
GCAGCAGCTGCCGCTGCAGCAGCACCGTCAACGCAGCTGAATTCCAGCAT
TAATTCCAGAACTTCATTAGGCGACCAGGGTGGTGCAATTGTTGTTGTTA
CCCCCGCACCACCCGTTGCTGCACCACCAACTGGCGGCCCAAATCGCAAC
CAAAGTCCCACGCGTGACTGCTCGGTCAAATGGAGCTCATGGAATCGACC
AGCCCGGATTCGATCAAGGATCAGCCGGATGCGGACATATCAAGATGTTC
GTGGCCAAATACCGAGACCTGGACGAGACGAGGCTACGCCAAATGTTCGA
GCAGTTCGGACCCGTTCACACACTGAATGTGCTACGGACAGTCACATCGA
TTAGCCGAGGGTGCTGTTTGTCACTACTATACAAGAAAGCCGCCCTGGGC
CGCCCAGACGCGTTGCACACATCAGACCTGGATGGAATGCACATCAATCC
GATGAGCCGGCGAATTGA
UFO03245.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:52:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bru-2-RM | 4146 | CG43065-RM | 532..1629 | 9..1092 | 5075 | 98.4 | Plus |
| bru-2-RL | 4177 | CG43065-RL | 532..1629 | 9..1092 | 5075 | 98.4 | Plus |
| bru-2-RK | 4085 | CG43065-RK | 908..2005 | 9..1092 | 5075 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:51:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12351996..12352783 | 9..796 | 3940 | 100 | Plus |
| 2L | 23513712 | 2L | 12358040..12358262 | 796..1010 | 755 | 95.5 | Plus |
Blast to na_te.dros performed 2014-11-28 20:52:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2273..2856 | 71..682 | 576 | 59.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6716..6923 | 40..251 | 410 | 69.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..7226 | 58..513 | 379 | 58 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..7217 | 179..660 | 366 | 58.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6923 | 108..315 | 361 | 65.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6910 | 125..326 | 353 | 67.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2493..2983 | 58..524 | 292 | 56.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2688..2968 | 44..316 | 260 | 59.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1075..1153 | 178..259 | 187 | 72 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1536..1623 | 179..268 | 184 | 68.9 | Plus |
UFO03245.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:16:15 Download gff for
UFO03245.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bru-2-RA | 499..1600 | 9..1095 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:43:16 Download gff for
UFO03245.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bru-2-RK | 908..2009 | 9..1095 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:32:01 Download gff for
UFO03245.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bru-2-RK | 908..2009 | 9..1095 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:32:01 Download gff for
UFO03245.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12351996..12352783 | 9..796 | 100 | -> | Plus |
| 2L | 12358041..12358261 | 797..1009 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:43:16 Download gff for
UFO03245.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12351996..12352783 | 9..796 | 100 | -> | Plus |
| arm_2L | 12358041..12358261 | 797..1009 | 96 | -> | Plus |
