UFO03247.5prime Sequence
1113 bp (1007 high quality bases) assembled on 2009-02-03
> UFO03247.5prime
CAGTCGACATGGCCGCGAAGCCCGAGGATAAGAGCACGGATATTCCGGAT
CGCCTCGTCGACATCAACCAGCGGAAAACCTACAAGCGCATGCGGTTCTT
CGGCAAGGGCGGGTTTGCAAAATGTTACGAGATCATCGATGTGGAAACCG
ACGACGTCTTCGCCGGCAAGATCGTATCCAAGAAGCTGATGATCAAACAC
AATCAGAAGGAGAAGACCGCCCAGGAGATAACTATTCACCGCAGCCTTAA
CCATCCGAACATTGTCAAGTTTCACAACTACTTTGAAGATTCGCAGAATA
TCTACATTGTGCTGGAGCTGTGCAAGAAAAGATCCATGATGGAGCTGCAC
AAACGTAGGAAAAGCATTACGGAGTTCGAATGCCGCTACTACATTTACCA
GATAATCCAGGGCGTTAAGTACTTGCACGATAACCGCATTATCCATCGAG
ATCTGAAGCTGGGCAATCTCTTCCTCAACGATTTGTTGCACGTGAAGATC
GGGGATTTCGGGTTGGCCACGCGCATTGAGTATGAGGGCGAGCGAAAAAA
GACCTTATGCGGAACGCCCAACTATATAGCCCCGGAGATCCTCACCAAGA
AGGGCCACTCCTTCGAGGTGGACATCTGGTCGATTGGCTGCGTCATGTAC
ACACTGCTTGTGGGCCAGCCGCCGTTCGAAACCAAGACTCTGAAGGATAC
GTACTCGAAAATCAAGAAGTGCGAGTACCGCGTGCCCAGCTACTTAAGGA
AACCGGCGGCGGATATGGTCATCGCCATGCTGCAGCCAAATCCGGAGAGC
CGCCCGGCAATTGGTCAGCTGCTGAACTTTGAGTTCCTCAAGGGCTCAAA
GGTGCCCATGTTCTTGCCCAGCTCTTGTCTGACAATGGCGCCGCGTATCG
GCAGCAACGACACCATCGAGGATTCGATGCACCCGCAAGCCACTGATGGA
GATGACGGCATCAGCCCGACGAACACTCGTCTGGAGTCGACTTCCTCAAG
CAATCTGCACGACGCCATTACGCGTCAGCGCAGGGTGGGCGCCCAGCGAG
GACTATCGCACGATTCGAGAGCTGTACCAGCAGCTCTTATCTATCACGAA
GCGCGATTCGGCA
UFO03247.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:25:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| polo-RB | 2324 | CG12306-RB | 264..1349 | 9..1086 | 5090 | 98.6 | Plus |
| polo-RA | 2980 | CG12306-RA | 657..1742 | 9..1086 | 5090 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:25:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20311335..20312067 | 333..1060 | 3205 | 97.7 | Plus |
| 3L | 28110227 | 3L | 20311047..20311273 | 106..332 | 1135 | 100 | Plus |
| 3L | 28110227 | 3L | 20310310..20310409 | 9..108 | 500 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:25:56 has no hits.
UFO03247.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:16:37 Download gff for
UFO03247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| polo-RB | 299..1404 | 1..1096 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:03 Download gff for
UFO03247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| polo-RA | 650..1755 | 1..1096 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:01:24 Download gff for
UFO03247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| polo-RA | 650..1755 | 1..1096 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:01:24 Download gff for
UFO03247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20310303..20310408 | 1..107 | 96 | -> | Plus |
| 3L | 20311049..20311273 | 108..332 | 100 | -> | Plus |
| 3L | 20311335..20312109 | 333..1096 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:03 Download gff for
UFO03247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20304149..20304373 | 108..332 | 100 | -> | Plus |
| arm_3L | 20303403..20303508 | 1..107 | 96 | -> | Plus |
| arm_3L | 20304435..20305209 | 333..1096 | 97 | | Plus |
