UFO03248.5prime Sequence
1072 bp (742 high quality bases) assembled on 2009-02-03
> UFO03248.5prime
CAGTCGACATGGAAGCGATTGCCAAACACGATTTCTCTGCGACGGCTGAC
GACGAGCTGAGTTTTCGCAAAACTCAGATTCTAAAGATATTAAATATGGA
AGACGATTCAAATTGGTATCGCGCGGAGCTGGATGGAAAGGAAGGCCTCA
TACCTAGTAATTACATAGAAATGAAGAATCACGACTGGTATTACGGACGC
ATCACACGCGCCGATGCTGAGAAGCTGCTGTCAAATAAGCACGAAGGCGC
CTTCTTGATACGCATCAGCGAATCCAGTCCCGGCGATTTCTCCTTATCAG
TCAAATGCCCCGATGGCGTTCAGCATTTCAAGGTTCTGCGCGATGCCCAA
AGCAAATTCTTCCTCTGGGTGGTCAAGTTCAACTCCCTCAACGAACTGGT
CGAATATCATCGGACGGCGAGCGTGTCCCGGTCGCAGGATGTCAAATTGC
GTGATATGATACCTGAAGAGATGCTCGTGCAGGCGCTGTACGATTTTGTG
CCACAGGAATCCGGGGAATTGGACTTCAGACGCGGCGATGTCATCACCGT
CACAGATCGCTCCGATGAGAACTGGTGGAACGGCGAGATCGGCATAGGAA
AGGCATCTTCCCAGCAACTTATGTGACGCCATATCATTCAGCAAGCTTTC
TAGACCATTCGTTTGGCGCGCGGGCCCAAGGTAAAGTGGTCATAATCATA
AATCATAATCCTTAATCATAATCACAACTAGCCTAAGGAGATCCTGTTCA
TGACTAGTGCTTGGATTCACACCAATAAAAAAACGCGCCGGCGGGCAACC
GAGCGTTCTAGAACAGATCCCGAATGGGAGCTCTTGAGGGCATTACTGGG
ATCTATCCACAGGGTGTCGAAGCGAGCTCTGATATCAATTACGCCCTCGC
CCCTGCCACTACATCGCAGTACTGTTGTAATCATTAAAGCATTTGGCCCG
ACAGGAAAGCAGTACAACGGATTGATGAACCTGGAATCGCCACGCACCAC
TCCCTGGCCGCCTTGGCTATGAAATTTTGCCATGGGGGAAAACGGGGGGC
GAAGAAAGTTTTCCCATATTTG
UFO03248.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:34:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
drk-RD | 2795 | CG6033-RD | 404..1036 | 9..640 | 3140 | 99.8 | Plus |
drk-RF | 2577 | CG6033-RF | 186..818 | 9..640 | 3140 | 99.8 | Plus |
drk-RA | 2744 | CG6033-RA | 353..985 | 9..640 | 3140 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:33:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13497368..13497537 | 470..301 | 835 | 99.4 | Minus |
2R | 25286936 | 2R | 13496981..13497153 | 640..469 | 815 | 99.4 | Minus |
2R | 25286936 | 2R | 13497613..13497732 | 304..185 | 600 | 100 | Minus |
2R | 25286936 | 2R | 13497792..13497891 | 184..85 | 500 | 100 | Minus |
2R | 25286936 | 2R | 13501813..13501890 | 86..9 | 390 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:33:59 has no hits.
UFO03248.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:16:35 Download gff for
UFO03248.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
drk-RB | 273..915 | 1..644 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:42 Download gff for
UFO03248.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
drk-RA | 346..988 | 1..644 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:13:28 Download gff for
UFO03248.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
drk-RA | 346..988 | 1..644 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:13:28 Download gff for
UFO03248.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13496978..13497151 | 471..644 | 98 | <- | Minus |
2R | 13497368..13497533 | 305..470 | 100 | <- | Minus |
2R | 13497613..13497732 | 185..304 | 100 | <- | Minus |
2R | 13497792..13497889 | 87..184 | 100 | <- | Minus |
2R | 13501813..13501897 | 1..86 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:42 Download gff for
UFO03248.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9384483..9384656 | 471..644 | 98 | <- | Minus |
arm_2R | 9384873..9385038 | 305..470 | 100 | <- | Minus |
arm_2R | 9385118..9385237 | 185..304 | 100 | <- | Minus |
arm_2R | 9385297..9385394 | 87..184 | 100 | <- | Minus |
arm_2R | 9389318..9389402 | 1..86 | 96 | | Minus |