UFO03249.5prime Sequence
1099 bp (1003 high quality bases) assembled on 2009-02-03
> UFO03249.5prime
CAGTCGACATGAAGTTCAGTGTGGTGGTCCTGGTGGCCCTACTACCGCTG
CTAGGAGCTGTTTCAGCGAATCGCACTTTTGTGGTGGACTACGAAAAGGA
TCAGTTCCTAAAGGATGGAGAACCATTCCGATTCATTGCCGGCTCCTTCC
ACTACTTCCGTGCTCATCCAGCCACCTGGCAAAGGCATCTTAGGACCATG
AGAGCTGCGGGTCTGAATGCGGTGACAACCTATGTGGAGTGGTCATTGCA
CAATCCGCGGGATGGCGTTTATGTGTGGAGCGGCATTGCCGATCTGGAAC
ACTTTATACGCCTGGCCGTGGGCGAGGATCTGCTGGTCATCCTCCGTCCG
GGTCCGTATATTTGTGCGGAGCGTGACATGGGCGGCTTTCCCTACTGGCT
GCTGAATAAGTATCCGGGCATTCAGCTCCGGACAGCAGATGTCAATTATC
TTAGCGAAATTCGCATTTGGTATACCCAACTGTTTGCCAAAATGAATAAA
TATCTGTATGGCAATGGTGGGCCAATTATAATGGTTCAGGTGGAGAACGA
ATATGGCTCCTTCTATGCCTGCGATCTCAACTATCGGAATTGGCTACGCG
ATGAGACCGAGAGTCATGTCAAAGGTCAGGCGGTGCTCTTCACCAACGAT
GGACCCAGTGTGCTGCGCTGTGGAAAAATCCAGGGCGTCCTAGCGACCAT
GGACTTTGGAGCAACGAACGATCTCAAGCCCATTTGGGCCAAGTTTAGAA
GTACCAGCCAAAGGGTCCGCTGGTCAATGCGGAATACTATCCCGGTTGGC
TAACTCACTGGACGGAGCCGATGGCCAATGTTAGCACCCAATCGATTACT
TCCACTTTTATAAACATGCTGGATCATGGTGCCAGTGTGAACTTCTACAT
GTTCTACGGCGGCACAACTTCGGATTCACAGCTGGTGCCAATGACATTGG
ACCCGGAAACTACATGGCTGACATTACAGCTACGACTACGATGCACCATG
ACGGAGGCGGGGGATCCACTCCCGAATACAGGCCCTGCGAACGCATTCAT
TGACGCTATCTCCGCTTGCAAATCAACCCGTCCGACGGTCCAACGATCT
UFO03249.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:33:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ect3-RA | 2236 | CG3132-RA | 164..1242 | 9..1081 | 5095 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:33:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12001776..12002193 | 445..861 | 2040 | 99.8 | Plus |
| 3R | 32079331 | 3R | 12001210..12001430 | 9..229 | 1105 | 100 | Plus |
| 3R | 32079331 | 3R | 12001482..12001701 | 225..444 | 1085 | 99.5 | Plus |
| 3R | 32079331 | 3R | 12002298..12002522 | 862..1081 | 660 | 93.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:33:21 has no hits.
UFO03249.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:16:07 Download gff for
UFO03249.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ect3-RA | 127..1222 | 1..1091 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:14 Download gff for
UFO03249.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ect3-RA | 156..1251 | 1..1091 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:13:07 Download gff for
UFO03249.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ect3-RA | 156..1251 | 1..1091 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:13:07 Download gff for
UFO03249.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12002298..12002531 | 862..1091 | 92 | | Plus |
| 3R | 12001203..12001430 | 1..229 | 98 | -> | Plus |
| 3R | 12001487..12001701 | 230..444 | 100 | -> | Plus |
| 3R | 12001776..12002193 | 445..861 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:14 Download gff for
UFO03249.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7826925..7827152 | 1..229 | 98 | -> | Plus |
| arm_3R | 7827209..7827423 | 230..444 | 100 | -> | Plus |
| arm_3R | 7827498..7827915 | 445..861 | 99 | -> | Plus |
| arm_3R | 7828020..7828253 | 862..1091 | 92 | | Plus |
