UFO03251.5prime Sequence
1117 bp (1021 high quality bases) assembled on 2009-02-03
> UFO03251.5prime
CAGTCGACATGTCTATTAACCTGCGCACCGTCTACGCCTTCGCCCGCGAG
ATGTACCCAAAGACCTCCAAGGAGACCATCCAATATGGAACAGCTGGCTT
TCGCGGCAAGGCTGAGTTCCTGGACAGCGTGATGTTCCGCATGGGCGTTC
TGGCCACCCTGCGTTCCCGGTATCGCGGAGGCTCCGTCATCGGTGTGATG
ATCACGGCATCGCACAATCCGGAGCCGGACAACGGAGTGAAGCTGGTCGA
TCCCAAGGGCGAGATGCTGGAGGCCAGCTGGGAGGCGATAGCCACCGATC
TGGTCAACGTCAGCGACCAGGAGCTGGAGCAGCAGGTGGCCAAGATCATA
AAGGACAACAATATCGATGTGACGACCAGTTCCCAGGTGTTTGTGGGCAT
GGACAACAGATACCACAGTCCGCGGCTGCTGAAAGCGGTGGCCGATGGCG
TGATAGCGCTAAAGGGTAACGTCAAGGAGTACGGCATTGTGACCACACCC
ATGCTGCACTACTTCGTGGTGGCGGCGAATACCAAGGAGGCATACGGCAA
GCCCACCGAGGAGGGTTACTACGACAAGCTGATCAAGGCATTCGAACTGC
TGCGCAACGGGCGCCTGGAGAACGGCAACTATCGCAATAGCATCATCTAC
GATGGTGCCAACGGTGTGGGTGCGCGCAAGATGCTGCAGTTCATCAAGCG
CATGAAGGGCACCCTCAACGTGACGGTCATTAATCAGGGCATCGGTGTCG
GCAAGATCAACGAGGACTGCGGCGCCGACTACGTGAAGGTGCAGCAAAGT
CCGCCGAAATCCATGCCCGAGGATGTGAAGCCGTACACGAGATGCGTCAG
CGTGGATGGCGATGCCGATCGGGTGGTGTACTTCTTTACCGACGACAGGT
GAGTTCCATCTGCTCGATGGCGATCGCATAGCCACCCTATCGCGGCTATC
TCATGGACTGGTCACACAATCGAGATTAGCTACGCTGACTGGTGCAACTG
CTTACGCAATGGTGCATCCACGACTACAATGACAGCTGAAGTTTCCCGTT
CTGGTACCCACGGCGGAAGCACCTGCACACAAAGGCTGAATACGACTTGG
GTAACTTCGAGGCAATG
UFO03251.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:13:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nst-RA | 2202 | CG10627-RA | 137..1269 | 9..1113 | 4905 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:13:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12528382..12529248 | 971..110 | 4120 | 99.4 | Minus |
| 3L | 28110227 | 3L | 12529934..12530035 | 110..9 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:13:31 has no hits.
UFO03251.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:16:02 Download gff for
UFO03251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10627-RA | 164..1269 | 1..1086 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:59:47 Download gff for
UFO03251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nst-RA | 131..1236 | 1..1086 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:45:46 Download gff for
UFO03251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nst-RA | 131..1236 | 1..1086 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:45:46 Download gff for
UFO03251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12528250..12529248 | 110..1086 | 97 | <- | Minus |
| 3L | 12529935..12530041 | 1..109 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:59:47 Download gff for
UFO03251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12523035..12523141 | 1..109 | 96 | | Minus |
| arm_3L | 12521350..12522348 | 110..1086 | 97 | <- | Minus |
