UFO03253.5prime Sequence
1125 bp (1009 high quality bases) assembled on 2009-02-03
> UFO03253.5prime
CAGTCGACATGTCCACCTTTAACTTCGCCAGCATGGCCGCCCAACTGGGC
CAGGAGCAGGGAATATCATTCGAGAACAAGGTGCTTTCCTGGAACACAGC
TGCCGATGTCCAGGATGTGGTGGATGCCCTTAACAAACAGACCACCGTGC
ACTATCTGAATCTGGACGGGAACACACTGGGCGTTGAGGCCGCCAAGGCG
ATTGGTGAGGGTCTGAAGCGTCATCCAGAGTTTCGGAAGGCGCTGTGGAA
GAACATGTTTACTGGTCGTCTCATATCGGAGATTCCGGAGGCACTCAAGC
ACCTGGGAGCCGCGCTAATTGTCGCGGGCGCCAAACTGACAGTCCTGGAT
CTCAGCGACAATGCCTTAGGACCGAATGGCATGCGAGGCTTAGAGGAGTT
ACTGCGATCCCCGGTCTGCTACTCGCTGCAGGAGCTGCTGCTGTGCAATT
GTGGCCTTGGTCCCGAGGGCGGTAGTATGCTGTCCCGGGCTCTGATCGAT
CTGCATGCCAATGCCAACAAGGCGGGCTTCCCGCTCCAGCTGCGTGTGTT
CATAGGTTCGCGCAATCGTCTCGAGGATGCCGGTGCTACGGAAATGGCAA
CCGCATTCCAAACCCTCAAGACCTTCGAGGAGATTGTTCTGGAGCAAAAC
TCCATTTACATCGAAGGCGTCGAGGCCCTTGCCGAATCCTTCAAGCATAA
TCCTCATCTACGAGTGCTAAACATGAACGACAATACTCTAAAGTCCGAGG
GAGCTGAAAAAATAGCTGAGGCTCTTCCCTTCTTGCCACTGCTGCGTGAA
ATGAGCTTTGGAGACTGCCTGATCAAAACTAATGGCGCCTACCACTTCGG
TGAGGCTCTGGAGAGAGGAAACGAACGACTGGAAGTTATCGACTTGGTTT
TAACGAAATCACAGCGACGGCGGCTTGTGTTGGTGAATGCTATGGGAAAC
AGCCCAGCTACGCATCTTGAATTCTAGATGGCAATAGCTTTGGAGAGAGC
AGCGAGAAGATATCAGCGAGATGAGTAGTTGCCACTGCTGCCGACTGCAA
CGTTCAGCACAGGGAGAAGAAGATTGGAAGATGAATACCAGCTGACAGCG
ACCGATTCGTAGAAGAGGAGTACCG
UFO03253.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RanGAP-RB | 2008 | CG9999-RB | 138..1243 | 8..1097 | 5050 | 98.1 | Plus |
| RanGAP-RA | 2401 | CG9999-RA | 531..1636 | 8..1097 | 5050 | 98.1 | Plus |
| RanGAP-RC | 2144 | CG9999-RC | 298..1379 | 32..1097 | 4930 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19445344..19446027 | 108..791 | 3420 | 100 | Plus |
| 2L | 23513712 | 2L | 19446097..19446341 | 791..1027 | 775 | 94.3 | Plus |
| 2L | 23513712 | 2L | 19445185..19445285 | 8..108 | 505 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:56:52 has no hits.
UFO03253.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:15:58 Download gff for
UFO03253.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RanGap-RA | 442..1561 | 1..1105 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:22:53 Download gff for
UFO03253.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RanGAP-RA | 524..1643 | 1..1105 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:36 Download gff for
UFO03253.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RanGAP-RA | 524..1643 | 1..1105 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:36 Download gff for
UFO03253.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19445178..19445285 | 1..108 | 96 | -> | Plus |
| 2L | 19445345..19446026 | 109..790 | 100 | -> | Plus |
| 2L | 19446097..19446426 | 791..1105 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:22:53 Download gff for
UFO03253.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19445178..19445285 | 1..108 | 96 | -> | Plus |
| arm_2L | 19445345..19446026 | 109..790 | 100 | -> | Plus |
| arm_2L | 19446097..19446426 | 791..1105 | 92 | | Plus |
