UFO03254.5prime Sequence
1144 bp (1049 high quality bases) assembled on 2009-02-03
> UFO03254.5prime
CAGTCGACATGGAGAGCCGCAGCGACATCCATCGCCAGTTGGCAGCCTCG
CTAACGGATGAGCTGGTCAAGCCGCTCAAGATCGTCGTCGAAGGACATCA
CAAGGCGCGCAAGGCGGTGGAAAGCAACGTGGACAAGGCGGCGCGAGTAC
TGGGCGAATGGCGAGCCAGCGAGGCGAAAGCCAAGAAGGCCTCCCATACG
GCGGCGCGCGAGAACGAGAAGCTGCAGGACGCAATGCTGGACGTGCGCAT
CCAGAAGTCACCATCGATTGCCCTGCTCCACCAGGGACCCAACAAGCAGG
CCGCAGAAAAGGAGCTCAAGTCAGCGGAGAAGGATTGCGTCAAGCTGGAT
AACAAGCGCAAGAAGGCCGAGGAGGCGGTGAAGCGTGCGGATGTGGAATA
CTACACCCTGTGCGTGCGTTCGGAGCGAGCACGCGTAGACTGGGAGATGG
CCGTGCTCCGGGGAAGTGCCCAACTGCAGAGCAGCGAACAGCAGCGGCTG
GGCAATATGCACAACTTTGCCCAGCAGTATGCACGCCTCATCTCGGACAT
GAATCCGATACTCGGTGGCCTGAGCACACGCCTGCAGCCGCAACTCGATG
CTTGCAATGTGGCTAAGGATATGCAAGTGGTGCGCCACATCCGCCGCAAT
TCGGAGGGACCCAGTGAGCAACTCCTACCGGACTTTTACTGCGAACACAC
CACGCTGGCCATGAATCGGGAGCGTCGCAAGCACGCTCTGATCAAGCTGC
TGCAGCTGGTCAAGACGGATCTGGAGCGGGAGCGACGATCCCGCGACGGA
TTGAGGGGACTGTCGCAATCGCTTAACCATCAGGAGCATCAGAACATCAC
CGATAAGCTGTACCACATTCGTTCCATGCTGACCTATTTGGAGGGCGCCC
GTCTCAAGCTGCACTCTGCCTCTTGGAGCTGGACCACAAGCCCAGAGCCA
CTCACCCACTGGCCAGCACATTCATATCACCCGTGACCGCACTGGTTGCA
GCAGAGCATCCTGAGGTGCCCAACTGGCTGAAGAACAACGAACAAGTCGC
AGACGCAGCAATCGACAGAATCTGGACCACGACATTCACCGAACTAAACA
CTAAACAGAGGATGGCTTCGGACAGAAACTGCTCCCACTGGCAG
UFO03254.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42388-RG | 5133 | CG42388-RG | 2039..3175 | 9..1138 | 5270 | 98.2 | Plus |
CG42388-RD | 2735 | CG42388-RD | 897..2033 | 9..1138 | 5270 | 98.2 | Plus |
CG42388-RC | 3014 | CG42388-RC | 1176..2312 | 9..1138 | 5270 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9051467..9052217 | 116..866 | 3755 | 100 | Plus |
X | 23542271 | X | 9051303..9051412 | 9..118 | 550 | 100 | Plus |
X | 23542271 | X | 9052278..9052388 | 867..975 | 455 | 98.2 | Plus |
X | 23542271 | X | 9052450..9052541 | 976..1066 | 315 | 96.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:15:17 has no hits.
UFO03254.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:15:57 Download gff for
UFO03254.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42388-RF | 665..1730 | 1..1066 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:08:49 Download gff for
UFO03254.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42388-RC | 1171..2236 | 1..1066 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:43:06 Download gff for
UFO03254.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42388-RC | 1171..2236 | 1..1066 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:43:06 Download gff for
UFO03254.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9051298..9051410 | 1..116 | 96 | -> | Plus |
X | 9051468..9052217 | 117..866 | 100 | -> | Plus |
X | 9052278..9052388 | 867..975 | 98 | -> | Plus |
X | 9052450..9052541 | 976..1066 | 96 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:08:49 Download gff for
UFO03254.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8945331..8945443 | 1..116 | 96 | -> | Plus |
arm_X | 8945501..8946250 | 117..866 | 100 | -> | Plus |
arm_X | 8946311..8946421 | 867..975 | 98 | -> | Plus |
arm_X | 8946483..8946574 | 976..1066 | 96 | == | Plus |