UFO03255.5prime Sequence
1144 bp (1017 high quality bases) assembled on 2009-02-03
> UFO03255.5prime
CAGTCGACATGTCATCCGCCGCGAAGAAACGGGAGGCGCAGAAGAAGAAG
GATGCGCGCAACAAGAAGATCCAACAGATACCCTCCACCAAGAAGGCCAA
TGGTGTCCCGGAACGCGAACTGACCGAGGAGGAGAAGCTGTGCGCCAAGC
TGGAGGAGGAGGCCCGGATCAGTGCGGAGGCCCGATCCTGCACCGGATCG
CTGGCGGTGCATCCGCGTTCCCGTGACGTCAAGATCGCCAACTTTTCGAT
CACGTTCTTTGGCTCCGAGCTGCTGCAGGACACCATGCTGGAGTTGAATT
GCGGGCGTCGCTACGGTCTGATTGGCCTGAACGGATGCGGTAAGTCCTCG
CTGCTGGCCGTGCTTGGCGGCAGGGAGGTGCCGGTACCGCCGCACATCGA
CATCTTCCACTTGACGCGCGAAATCCCGGCCAGTTCAAAGAGTGCGCTGC
AGTGCGTCATGGAGGTGGATGAGGAGCGCATTAAGCTAGAGAAGCTGGCC
GAAGAGCTGGCCATGAGCGAGGAAGATGATGCTCAGGAGCAGCTGATCGA
CATCTACGAGCGGCTGGACGATATGTCCGCCGATCTGGCAGAGGTCAAGG
CGGCCCGCATCCTTCACGGTCTTGGCTTCGACAAGGCCATGCAACAGAAA
CAGGCCAAGGACTTCTCAGGTGGTTGGCGTATGCGTATCGCCTTGGCCCG
CGCGCTGTTTGTGAAGCCCCATCTGCTGTTGCTGGACGAGCCGACGAATC
ACTTGGATTTGGACGCCTGTGTGTGGCTGGAGGAGGAGCTTAAGACATAC
AAGCGAATCCTGGTGCTCATCTCGCACTCGCAGATTTCCTCAACGGTGTC
TGCACAAACATCATTCACCTGACGGGCAGCGACTCAAGTACTATACGGTA
CTATGAGGCTTTGTGCGCACACGCATGGAACTGCTGGAAACCAGATGAGC
AGTACACTGGGACAGACCAGATTTCGCACATGAAGACTACATGCTCGATC
GTCACGTTCCGCCAAGTGGCCGCGACGGCGCCAGTCAAGGAAAAGACGCT
GGCCAAATGTGCTCAGGACTCAAGAGAAAGGTGTCCGACAATAGTGCTCA
CTTTACTCCATCTGGGCGGCAGGTCCGCCCCCGGGAATGTCGAA
UFO03255.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:32:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9281-RD | 2565 | CG9281-RD | 243..1356 | 9..1100 | 4890 | 97.3 | Plus |
| CG9281-RC | 3033 | CG9281-RC | 71..1184 | 9..1100 | 4890 | 97.3 | Plus |
| CG9281-RB | 3205 | CG9281-RB | 243..1356 | 9..1100 | 4890 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:32:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15708311..15708974 | 672..9 | 3320 | 100 | Minus |
| X | 23542271 | X | 15707912..15708241 | 986..667 | 1175 | 96.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:32:50 has no hits.
UFO03255.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:15:55 Download gff for
UFO03255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9281-RC | 71..1193 | 9..1107 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:56 Download gff for
UFO03255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9281-RB | 243..1365 | 9..1107 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:48 Download gff for
UFO03255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9281-RB | 243..1365 | 9..1107 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:48 Download gff for
UFO03255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15707777..15708238 | 670..1107 | 93 | <- | Minus |
| X | 15708314..15708974 | 9..669 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:56 Download gff for
UFO03255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15601810..15602271 | 670..1107 | 93 | <- | Minus |
| arm_X | 15602347..15603007 | 9..669 | 100 | | Minus |
