UFO03256.5prime Sequence
1146 bp (1036 high quality bases) assembled on 2009-02-03
> UFO03256.5prime
CAGTCGACATGAGCTCGACGCAGGAAAAACCGGAGGAGCTGGACAGGATC
CAGAAGAGGGTCAACAAGATCCTTGAGGCTCGCCTGGAGTCGGACAAGGA
CACATTGGATGCTCTGAGTGGTCTGTCCACTTTCTTCACGGAGAATACGC
TGCAGAATCGCAGGAATCTGCGTAGCCAGATCGAACACCGCTCCGTGGGC
ATCAACGAGAACTTTCTGAAGGCCTTCCGCCAGGTGAAGCTCTCGCTGGA
TGCCGTGTGCGAAGATCTGGACACGATGGCCACGTCAGTAGAGACGATGA
AATCGGATCTGGAGACCTCAAAGGCGCTCACCAAGGATCTGATCAAGCAG
ACCAACACCATGCAGCGGGAGAGGGACCGCTTGGAGGTGCATAAGCAGAT
TGCGCAAGCTTTTCTGGCTCGTTTTCAGCTAAGCGGAGCCGAGCACCAGT
TACTATATGGCGCTGCCAAAGATGCACCCATTGTGGCGGACTTCTTTCGC
GTATTGGACAGAGTACAAAGCATTCACGCTGACTGCCGGCTGCTGATGCA
GTGTGGATACCAAACAGCAGCCATCGACATCATGGAGGAGATGACATTGC
ATCAGGAGGGCGCTCTGGAAAGGCTCTACCGATGGACTCAGAACCACTGT
CGCAGTTTGGAAAACAACGAAATAGGTCCGCTGATTGTGGAAGCCATGAG
CCGGCTGCAGGACCGTCCGGTGCTATTCAAATACGTCATTGACGAATACG
CCATTGCGAGAAGAGCGGTTTTGGTGCGTCAGTTCATTGAGGCCTTGACG
GAAAGGGGTCCTGGAGGGAACCCCAAGCCCATTGAGCTGCATGCCCACGA
TCCGAAGAGATATATTGGCGATATGTTTGCGTGGCTGCATCAGAGCATTC
CCACCGAAAAGGAGAACCTATCTTTGCTGTTCAAAAGTGCGATAGCAGGT
AAGATAAGAAAATGCATAAATTATGGCACCAAATAGTGCTCTCGTTTGCA
AGCAAGCTTTCTAGAACATCGTTTGGCGCGCGGGCCCAAGTTAGTGGTCA
TAATCATATCATATCATAATCATAAATCACACTAAGCTAGGAATCTTGCA
TGACATATGCCTTGATTCACAACAAATAAAACGTCTGGGCGCACCG
UFO03256.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:21:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1968-RB | 2087 | CG1968-RB | 22..1015 | 9..997 | 4815 | 99.3 | Plus |
| CG1968-RA | 2028 | CG1968-RA | 22..964 | 9..949 | 4650 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:21:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9286994..9287627 | 97..730 | 3170 | 100 | Plus |
| 2R | 25286936 | 2R | 9287683..9287938 | 731..983 | 1100 | 98 | Plus |
| 2R | 25286936 | 2R | 9286848..9286938 | 9..99 | 455 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:21:58 has no hits.
UFO03256.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:15:53 Download gff for
UFO03256.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1968-RB | 13..1011 | 9..1001 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:15 Download gff for
UFO03256.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1968-RB | 22..1020 | 9..1001 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:06 Download gff for
UFO03256.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1968-RB | 22..1020 | 9..1001 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:06 Download gff for
UFO03256.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9286848..9286937 | 9..98 | 100 | -> | Plus |
| 2R | 9286996..9287627 | 99..730 | 100 | -> | Plus |
| 2R | 9287683..9287950 | 731..994 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:15 Download gff for
UFO03256.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5174353..5174442 | 9..98 | 100 | -> | Plus |
| arm_2R | 5174501..5175132 | 99..730 | 100 | -> | Plus |
| arm_2R | 5175188..5175455 | 731..994 | 97 | -> | Plus |
