UFO03257.5prime Sequence
1111 bp (1012 high quality bases) assembled on 2009-02-03
> UFO03257.5prime
CAGTCGACATGATGAAAATGGAGACTGACAAAATAATGGACGAAACCAAC
TCCAATGCACAGGCCTTCACAACCACTATGCTGTACGACCCGGTGCGCAA
GAAAGACTCATCGCCCACCTACCAAACGGAGCGGGAACTCTGCTTTCAGT
ACTTCACCCAGTGGAGCGAGTCGGGCCAGGTGGACTTTGTGGAGCACCTG
CTGTCGCGCATGTGCCACTATCAACACGGACAGATCAATGCCTATCTCAA
GCCGATGCTCCAGCGGGACTTTATCACATTGCTGCCAATCAAGGGTCTGG
ATCACATCGCAGAAAACATTTTGTCGTACTTGGATGCCGAATCGCTCAAA
TCATCCGAGCTGGTCTGCAAGGAATGGCTGCGCGTCATTTCCGAGGGCAT
GCTCTGGAAGAAGCTCATCGAACGCAAGGTGCGCACAGATTCCTTGTGGC
GCGGACTGGCCGAGCGGCGTAATTGGATGCAGTACCTCTTCAAGCCAAGA
CCGGGCCAGACTCAACGGCCACACTCATTCCATCGCGAGTTGTTCCCCAA
GATAATGAATGACATTGACAGCATAGAGAACAACTGGCGGACTGGCCGCC
ACATGCTGCGCCGCATCAACTGCCGGTCCGAGAACTCGAAGGGTGTCTAT
TGTCTGCAGTACGATGACGGCAAGATTGTCTCCGGACTGAGGGACAACAC
CATCAAGATCTGGGATCGCACGGATTTGCAGTGCGTTAAGACCCTAATGG
GCCACACTGGATCGGTGCTGTGCCTGCAGTATGACGACAAGGTGATCATC
AGTGGCTCCAGCGACTCCACCGTCCGCGTGTGGGACGTCAATACCGGCGA
GATGGTCAACACCCTTATCCACCACTGCGAGGCGGTGCTGCACTTGCGCT
TTAACATGGCATGATGGTACCTGCTCCAGGATCGCTCCATCGCGTCTGGG
ACATGACCTCACCCAGCGAGATTACGCTGCGCGCCGTCTGTCGTCACGTG
CCGCGTCAATGTGGTGGACTTTGATGAAAATAATCTGTCGCAGCTGGGGA
TCGACATCAAGTCTGTCCATTCTACTGTGAAATCAGGCACTGGATGCCAA
GCCGTGCATCC
UFO03257.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:14:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| slmb-RB | 3492 | CG3412-RB | 492..1519 | 9..1027 | 4880 | 98.9 | Plus |
| slmb-RC | 2549 | CG3412-RC | 492..1519 | 9..1027 | 4880 | 98.9 | Plus |
| slmb-RA | 3492 | CG3412-RA | 492..1519 | 9..1027 | 4880 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:14:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21122321..21122593 | 561..289 | 1365 | 100 | Minus |
| 3R | 32079331 | 3R | 21125162..21125384 | 288..66 | 1115 | 100 | Minus |
| 3R | 32079331 | 3R | 21121763..21122009 | 981..739 | 1035 | 98.4 | Minus |
| 3R | 32079331 | 3R | 21122072..21122251 | 740..561 | 900 | 100 | Minus |
| 3R | 32079331 | 3R | 21126938..21126994 | 65..9 | 285 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:14:42 has no hits.
UFO03257.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:15:51 Download gff for
UFO03257.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slmb-RA | 480..1529 | 1..1039 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:15:11 Download gff for
UFO03257.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slmb-RA | 485..1534 | 1..1039 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:04:21 Download gff for
UFO03257.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slmb-RA | 485..1534 | 1..1039 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:04:21 Download gff for
UFO03257.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21125162..21125384 | 66..288 | 100 | <- | Minus |
| 3R | 21126938..21126998 | 1..65 | 93 | | Minus |
| 3R | 21121712..21122007 | 741..1027 | 96 | <- | Minus |
| 3R | 21122072..21122251 | 561..740 | 100 | <- | Minus |
| 3R | 21122322..21122593 | 289..560 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:15:11 Download gff for
UFO03257.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16947434..16947729 | 741..1027 | 96 | <- | Minus |
| arm_3R | 16947794..16947973 | 561..740 | 100 | <- | Minus |
| arm_3R | 16948044..16948315 | 289..560 | 100 | <- | Minus |
| arm_3R | 16950884..16951106 | 66..288 | 100 | <- | Minus |
| arm_3R | 16952660..16952720 | 1..65 | 93 | | Minus |
