UFO03258.5prime Sequence
1117 bp (838 high quality bases) assembled on 2009-02-03
> UFO03258.5prime
CAGTCGACATGCTGGAAACCGGTGACGAGGCTGAGATGCTGGCCGGTTTC
ACCAGTTCAGATGTTGGCCCCGAGGCGAAGGAATATAATTTACTGCGCGC
CGATGAGGAATACCGCAATGGCAATGTGGAGCACTCAATTTACTACCAGG
TTAAAGCCCAGTTCCAGTCCACCGATCTGCGTTACCTTACCGAATCGGCG
GAACTGGAAAATCAGCGTCCCACCGCAGAGGAGCTGATCAAATCAGCCAC
TAAACTGGAGAAAAAGGACTACAAAAGCAAAAAATTTCTGCAGAACATCA
TCAAGTACCTCCAGCAAATGGAGCAGGAGAAACAGCCTAAGAAGCCAATC
AACGAAATACCAGAGTATCTAGACTTCCTGGATGATGTCCAGGATCCTAC
AGAGGGTCTAACTCGCATTTCAGAGAAATGCAATAGTCTGCCCCAAGAAT
GGTGTGTCCTCCAGCTCTGCAAGAGCTTTAATCCCGCCACCACCTACTCC
GTTTTCAATGAGATCATTGCCAGCGATGGAGCAATATATCTCACTCTGCT
CCGACACTGTAGAAGTTCCCAACTGGGACCGATTTGCCTGAAAAATTTCC
AACGAAAATACGGCAAATCTCTTTCGAGAGTATAGCACTCTGGTGGAAAG
ATTTAGGCGAGTGGTAACCCGTGGATCCACTCAACATGAAAGGTAAAGAG
GCTAAGCAGAAGTATTGGGGAGGAGCTGAATGGGTTTTGACACTTTTCAG
CAAAACTACTTTGCCGACTGTCGGGGACATAATATCTCCAATATTCCTTT
CTGTCTTTTGGCAAAAGATGATGACTGCACTGTTTGTTTCAAAAAACAAA
ATCAAAAGCACCCTATACTCTGGTTGACGATTTCTGTCTGCTTATTCAAT
GGGGTACCCACCAACGTGGTTTTACTTTCCCAAGCGGCCTCCGCATGCCC
ATCCGAACTGAAAATCGCAGATCTTCAAACTCACTCTGCTTGACCTGGTC
AGACAACGAAAAATGAAATCACGTCCGCATATAATTGCCTAAAGTGTTTG
GCCGCGACCTGGCCGGAAATGGGAAGAGCGTCAATCCCTGACGGCCAAAA
AAATTTTCCACATCATC
UFO03258.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:33:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sse-RA | 2177 | CG10583-RA | 94..1155 | 9..1090 | 4325 | 95 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:33:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5661267..5661740 | 753..276 | 2175 | 99 | Minus |
| 3L | 28110227 | 3L | 5661802..5661998 | 277..81 | 985 | 100 | Minus |
| 3L | 28110227 | 3L | 5661001..5661190 | 974..774 | 380 | 88.6 | Minus |
| 3L | 28110227 | 3L | 5662082..5662154 | 81..9 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:33:40 has no hits.
UFO03258.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:16:13 Download gff for
UFO03258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sse-RA | 82..1061 | 1..1000 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:27 Download gff for
UFO03258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sse-RA | 88..1067 | 1..1000 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:13:18 Download gff for
UFO03258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sse-RA | 88..1067 | 1..1000 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:13:18 Download gff for
UFO03258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5661802..5661997 | 82..277 | 100 | <- | Minus |
| 3L | 5662082..5662159 | 1..81 | 95 | | Minus |
| 3L | 5661267..5661738 | 278..753 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:27 Download gff for
UFO03258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5654367..5654838 | 278..753 | 98 | <- | Minus |
| arm_3L | 5654902..5655097 | 82..277 | 100 | <- | Minus |
| arm_3L | 5655182..5655259 | 1..81 | 95 | | Minus |
